RNA id: XM_043217784.1


Basic Information

Item Value
RNA id XM_043217784.1
length 1950
RNA type mRNA
GC content 0.48
exon number 6
gene id ptp4a3a
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5586537 ~ 5609859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTGGAAGAGAAACTCTCCTTCTGTCAACACTCAGTGAGTCTCTGCACCTTTAAGTGCTGAAGACACTAGTGTGGGTCCCTACAGCCTCAGTAAAACTCTAGAGCGCACGAGAGCAGCATTCATACATCTGAATCTCTCAGCGTCCGCCTGTGCCAGAACCAGAATGGATTGTTACCCATAACGctcaaaatattaagttagcgGCCCTGTCCTTCGGTAGTGGCTTCGTCCATGGCGTTCTTGCAGAGGACTGGAGACTACTGCCACGCTCAACATCTACGTGTCTAGACTTGGGGAAAAAACCAACCTCTGAATCCTCTGTATGCACGGAGACGCTCTTTCCTCTGCCGACTGTGGTCCTGCCACCCGAAACTCCTCTCAAATCTGATGGGGTGATCCTGCCTCTCTGGCTACAGTAAGCCATTAGAGAGGGGATATAAGATACTGGGAACTGATTAGAACATCGAGGAGTCTGATTCACGAAGAAAGATCAAAGACTGAACAAAATCGCGAAGAGCATCCGCAAAGTAAATAAGCTTGTTAGCCGTTTGGAGGAAGCGCGATGGCTCGGATGAACCGGCCGGCTCCCGTGGAGGTGTGCTACAAGAACATGAGGTTCTTAATCACACACAACCCAACGAACTCCACTCTGAGCAGCTTCATAGAGGATCTTAAGAAGTATGGTGCCACGACGGTGGTTAGAGTTTGTGAAATAACCTACGACAAAACTCCATTGGAGAAGGATGGGATCACAGTCGTGGACTGGCCTTTTGATGACGGCGCTCCTCCTCCATCGAAGGTCGTGGAGGACTGGCTGAGTCTCCTGAAGAGACGATTCGTAGAGGAGCCCGGCTGCTGCGTGGCTGTGCACTGCGTGGCCGGTTTAGGAAGagcTCCAGTACTTGTGGCCGTGGCGCTGATTGAAAGTGGGATGAAGTATGAAGATGCCATCCAGTTCATCAGACAGAAGCGCAGGGGTGCAATAAACAGCAAGCAGCTGACGTATCTAGAGAAATACCGGCCCAAACAGAGACTGCGCTACAAGCACCCGCACATTTTCAAGAACAAGTGCTGCATCATGTGACTGCACCCTCACCCTGCTGTTCTGAACCGAGCTGAACCTGACGGACTGGGCCACAACTGATGCACTTTGCTGATTTGCTATTAACATACGAACTGATTCGGTCTGGATGAAAACCCCACCGGTGCCTAAAGTCCTCCTCACTCGGACTGTGGTGCGGATACTGCCATGGCTTTTCTGAGACTTGCGGAACTGCTAGATATGGCGaaggtgacctctgacctttgacccttgCACCAGGACCGAAAACCCTAATCTTGCCTCAAATGATCGTGATTGTCTGAAAGAGCCAGACGGTGTGATAATGTGAATCATGGACAAAATGTGTGCTCTTTTtcactctcttttctttctacCGCTTTCCTGCTCTGCTCGGCCGGGAGTGCGATTTTTAGACGACTGCGGTTCCTTTAACAGGTTCGGTTTTCAGCACAAATCTTTTTACTGGTGACCTTTTCCATGATGCTTTTATGTCGTGTGAGCAAAAGACGGTTAAATCGGGCTAACTAAGGGCTCACGTGAAAGATATTTCTATTCGGGTGAGTGCCAGATACTAAACGGTTTCTACGTGAAGTCTGAGGAATTTAACAAAGGAAATGCTTGTTATGCGTGTTTATGTGCTTAAACTCAAACCTTGTGTTTGCTGAAATGATTTTAACGTGTAAGGACCGCGGGGTGACCTGGAGGCTATCTGTCTGCGATATTTGTCCATTCGGGTCATCAGAGATAAGatggtgaaataaaaaaaaaaaggccctaTGTGAATGAATTATGAGACGCGACTGTggtttaaagttgtttttctctgttttttaaGAACACACCTCCAGCTGCATAATACAAATAAAGGCTGTTGCAATCATGAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193179 lncRNA downstream 63571 5520939 ~ 5522966 (-) True G130827
TU193178 lncRNA downstream 63917 5520939 ~ 5522620 (-) False G130827
TU193134 lncRNA downstream 145672 5440426 ~ 5440865 (-) True G130804
TU193130 lncRNA downstream 152608 5433562 ~ 5433929 (-) True G130801
TU193116 lncRNA downstream 180901 5404516 ~ 5405636 (-) True LOC122324254
TU193252 lncRNA upstream 77526 5674554 ~ 5674878 (-) True G130880
TU193297 lncRNA upstream 148820 5745848 ~ 5876713 (-) True G130914
TU193304 lncRNA upstream 155557 5752585 ~ 5883367 (-) True G130920
XR_006247116.1 lncRNA upstream 241765 5838793 ~ 5847759 (-) True LOC122324223
TU193350 lncRNA upstream 510111 6107139 ~ 6162535 (-) True G130955
XM_043217058.1 mRNA downstream 59367 5523080 ~ 5527170 (-) True xkr8.3
XM_043217324.1 mRNA downstream 66703 5515027 ~ 5519834 (-) True LOC122323471
XM_043217325.1 mRNA downstream 75881 5506052 ~ 5510656 (-) True LOC122323472
XM_043217326.1 mRNA downstream 82132 5501265 ~ 5504405 (-) True LOC122323473
XM_043218366.1 mRNA downstream 183406 5398274 ~ 5403131 (-) True si:dkey-154b15.1
XM_043218143.1 mRNA upstream 17240 5614268 ~ 5670371 (-) True rims3
XM_043217403.1 mRNA upstream 78457 5675485 ~ 5705310 (-) True glcci1a
XM_043217405.1 mRNA upstream 109121 5706149 ~ 5716287 (-) True umad1
XM_043217406.1 mRNA upstream 109121 5706149 ~ 5716274 (-) False umad1
XM_043217226.1 mRNA upstream 142291 5739319 ~ 5744577 (-) True LOC122323412
XR_006247124.1 other downstream 181319 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 181637 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 326373 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 334348 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 428535 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 765319 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 1034161 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 1051410 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 1106295 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 1106843 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile