RNA id: XM_043217793.1


Basic Information

Item Value
RNA id XM_043217793.1
length 4139
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC122323727
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12619783 ~ 12657157 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCAAGCTCGAGAAGCCTTCCTGTTGCTATAGTTGTGCGCGCTAGCTGAACATGGCAGCAAAGGTAATGATAAAGAGGGCTGATCCAGCAGAGCTCAAGTCAATTTTCTTGAAGAAAGAAAACCTGaggattaatttaaaaatgcatcgaGAACTGTATGGAACTCATATATGCCAGTGTGGAGAAGAACGGAGAGCACTACATGTCCCCAGAGGACTTTGTGTCCAAGTACCTTCACGCAAAAACAGACATACAGCCTTCCAAAGAGGCCACCGCTTTACTGGCAGGTGTTGTGGACCAGACTAAAGATGGGTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTATGCACTCCGGATGCTCTCTTCATGGTTGCCTTCCAGCTCTTTGACAAAACTGGAAACGGAATTGCCACTTTTGAGGATGTGAAACAAGTTTTCGGTCAGACCACTATACACCAGCACATCCCCTTTAACTGGAACTCTGAATTTGTTCAGCTCCACTTTGGCGCCGAGAGGAAGAAACACCTTAACTATGGGGAGTTCACTCAGTTTCTGCTGGAGATGCAGCTAGAACATGCCAGACAGGCTTTTATGCAAAGAGACAAGGCCAAGACCGGCGCCATCACCGCTCTGGACTTTAGGGACATCATGGTGACCATCAGACCCCACATGCTCACACCATTTGTGGAGGAATGCTTAGTTGCAGCGGCCGGTGGCAGTACGTCACATCAGGTCAGCTTTTCCTACTTTAATGGCTTCAACTCTCTGCTAAACAACATGGAGCTCATTAGAAAGATCTACACCACCCTGGCAGGCAACCGCAAAGATGTGGAAGTTACTAAAGAGGAGTTCATCATCGCTGCCCAGAGGTTTGGCCAGGTGACCCCCATGGAAGTGGACATCCTGTTCCAGCTGGCTGACCTATCTGAGCCGAGAGGacgtGTTGGTTTAGTTGACATTGAGATGATTGCACCTCTGGAGGAGGGAGCTCTTCCCTACAACCTTGCTGAGATTCAAAGACAGCAGTCTGGTGGGGATGTGTCTCGTTCCTTTCTGCTTCAGGCCGCTGAGTCGGCGTACAGGTTCACCCTGGGCTCTGTGGCTGGAGCGGTGGGTGCCACTGCCGTGTACCCCATCGACCTGGTGAAGACCCGTATGCAGAACCAACGCTCTTCAGGTTCCTTTATGGACGAGCTGATGTACAAGAACAGCTTCGACTGCTTCAAGAAGGTGGTACGCTACGAGGGCTTCTTCGGCCTCTACAGAGGCCTCGTACCGCAGCTTCTGGGCGTGGCTCCCGAGAAAGCCATAAAGCTTACAgTGAATGACTTTGTGAGAGGAAAGACTATGCAAAGAGATGGCAGCGTTCCTTTACCTGCTGAAATCTTGGCAGGCGGATGTGCTGGGGGATCTCAGGTGATCTTCACAAACCCTCTGGAGATCGTGAAGATCCGACTGCAGGTGGCAGGAGAAATCACCACAGGGCCACGCGTCAGCGCTCTGTCTGTCATCCGTGACCTGGGTTTTTTCGGTCTGTACAAGGGTGCAAAAGCCTGTTTCCTGAGAGACATCCCCTTCTCGGCCATCTACTTCCCCTGCTACGCACACACCAAGGCGGCCCTGACTGATGAAGACGGGCGAGTGGGACCTGGCAGGCTTTTGCTGGCAGGGGCGCTGGCGGGCATGCCTGCCGCATCCCTGGTGACCCCTGCTGATGTTATCAAGACCCGGTTACAAGTGGCTGCCCGTGCAGGCCAGACCACGTACAATGGACTCATTGACTGTTTCTGGAAGATTCTTCAGGAGGAAGGGCCTCGTGCCTTCTGGAAAGGAGCTGGAGCACGCGTGTTTCGCTCCTCGCCTCAGTTTGGAGTGACTCTAGTGACCTATGAGCTCCTGCAGAGGTGGTTCTACGTAGACTTCGGTGGACAAAAACCAGCTGGCGCAGAGCCTACTCCCAAGTCTCGGATCAGCCTCCCGGCGCCCAATCCTGACCACATCGGTGGCTTCAGGTTGGCTGTGGCCACGTTTGCTGGCATTGAGAGCAAATTTGGACTGCATCTACCACGATTCCGAGCGCCTGCCGCCCCACACGTTTAAAGCAAATGCATCCACTTCAGTTGCACTGGAACAAACGCACACATGAATCTCTTCCTTCTAGTTGAGATCATAAAACCTTCAGCAGATGAACtggaaataatgttttatgtgatTGTTAGTGCAGATTACAACTTTTAAGTACACCGTAGATGGGatgatgttatatattttttaaatctaccaCAAAAGTCCTGGATTGTTTGGCGGGGTTGTAGTGtgactttgatttatttttaaatgtaaatcattttcagttttatttctttttacctaaaaaacaacaacagaaacaatcAGTTACATTTACTACagtttggttatttatttattaaatgaacgATGCATATTGCAGGGTTTTAAAACACTACAAGCATATCCAGTTGGAAATGACCAGGTTGAGTTGTTTAAATGATAGATGTTCATCtgtgtacattttcttttgtcCTCCTAAATATTTAAGCACGTAGCACTCATTGGGCAGTTGATTTCATTACTGATGTGGACTCTCACATTTGAATGTATTATAGTATTTggtatttatgtttgtatagTGTTAAACTTGAGTGTTAGGAGTCTACACAGTGGCAGTTTATGGTCGATGTGAAATCAGAGACTTGGCGGTAAAGTGGTACAGATTTCTCAACCCcttgaaaaataatgtgaagACTAAATTGAGCTGTACAGTAGAGTTGATTATAGAGTGTAAAGATTGTGCCTTACTGTAAGTATGGCAGCAATAGATGCACCGATGGACAGGCGGATTTATTAAAAGGacatcaaacaaaaatgtttgctaGAAGCATGGTTTATTTGCcaatacttgttttatttaaccaGACACTTCTTATGGTTTTCAATAACGTTATTTCTATATGTGAAACATATTTTAGTAAGCGCACAATACCTGCTTGCATCGTTGTAACACTGACGAGAAAGCCACCGAGTATTGCTGACAGTCACCAACTTATATATAACTTAATTTGTCTATGCTTCATGCAGGGGCTcagtacaaaaatatacactCACACCAAGTAATCTGAAATAACCACAAACCAACATGGAAGATGCCTTTCTAGCAGCAAGTAAttacaaattcacatttttgaaatgcacattttcaaaaatggtaTTAACATTAAATGATGCAGCATTAATTGCCATCAAGGTAAAGAGACGgaacataaaatacaattatctCCTGCGCAACAAAAAACTGTACATAAAACGCACGGAAAATAAACCCATTTTAAAGCTTAGTAGCAAACCCAGGAGTACGACATTTAAGGGACGGTTTACCTAAATATAAAACTTCTGTCATTTAATCCCCTTCGTGTCATTTCGCACGCGTTTGACGTCAATTAAACGACAGCGTTCAATATTCACGTTCATTACGGGACGCCAGCGGCGAGTAAAATAAAGTCGATATTTTGCTAATATGACACTCTGCTAATTCCAGAAACTATATGTTCAAGAACTCAAAGTCGCTGTTTTCAGTTATTTGTATTGTCACATTTCAGCTTTCAGTGATTTAGACAACACCGGTcgtgtaatgtttattttacgtGCATTCTTCGAGAACCACTCGACAGAGGGACTTACACAGTCATCACAGACTCACATTCACAACATGATTCATTCGCCGTGGCGTTGCAAGCGGTGCGACAAACACGTGATACAGACATCTTCTAATTTCGTACATTAACCTCCACATTACGAAaagaactaaacaaataaaaaaaccatGTCGTTTACAGCGACGTGTACGGCATAGCGCAAATACATTGTCACGATGTGACTGTAATCAGAGGCTGCATCCGAAATCGCAAATGTGAAAGAGCATGCCCCAACTCGCGGTATTCGTGAAACAATAGGAGCGAAAGTACCCGGATGACCTTTTATTTCGGATCAGAGGAAGTAAATGTGTGAGACTTCCGGTTCATTAACCGCTATAGGGAAATTacgaaaaataataaagtgcaaaaaatttaaattaataaaataaaataaaattaaaataaaataaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195810 lncRNA downstream 38966 12577995 ~ 12580817 (-) True G132579
TU195813 lncRNA downstream 46242 12570941 ~ 12573541 (-) True G132580
TU195590 lncRNA downstream 63138 12556258 ~ 12556645 (-) True G132455
TU195565 lncRNA downstream 68278 12548529 ~ 12551505 (-) True G132445
TU195564 lncRNA downstream 71613 12546492 ~ 12548170 (-) True G132444
TU195839 lncRNA upstream 30653 12687803 ~ 12697296 (-) False G132602
TU195840 lncRNA upstream 30653 12687803 ~ 12701078 (-) True G132602
TU195843 lncRNA upstream 42772 12699922 ~ 12722428 (-) True G132603
TU195883 lncRNA upstream 134407 12791557 ~ 12829799 (-) True G132627
TU195897 lncRNA upstream 197904 12855054 ~ 12857406 (-) True G132637
XM_043217771.1 mRNA downstream 51280 12558911 ~ 12568503 (-) False pdk4
XM_043217770.1 mRNA downstream 51284 12558911 ~ 12568499 (-) True pdk4
XM_043218309.1 mRNA downstream 111179 12497228 ~ 12508604 (-) False sgce
XM_043217194.1 mRNA upstream 10143 12667293 ~ 12669215 (-) False sem1
XM_043217244.1 mRNA upstream 46442 12703592 ~ 12705647 (-) True dlx5a
XM_043217500.1 mRNA upstream 69362 12726512 ~ 12727814 (-) True chrac1
XM_043217229.1 mRNA upstream 121901 12779051 ~ 12786005 (-) True gnrhr1
XM_043217566.1 mRNA upstream 205675 12862825 ~ 12941929 (-) False trioa
TU195513 other downstream 181712 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 786876 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 882301 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1448870 11170270 ~ 11170913 (-) True G132219
TU195129 other downstream 2309108 10307958 ~ 10310675 (-) False elp2
TU195817 other upstream 10114 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 370667 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 627381 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 837680 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 837680 13494830 ~ 13498090 (-) False G132784

Expression Profile