RNA id: XM_043217800.1


Basic Information

Item Value
RNA id XM_043217800.1
length 4204
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC122323728
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12569233 ~ 12621020 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtacattataACATCATTTTGGGAAGGGAGAGGTTGGATCTTTCAGTTATCTCGAGGTAGCAAGGCGGTCCATGAGCATCCTGGCACCTCTGAAAAATGTAGGCCACCAGCTTCCTCTTCTGCCAAGCAGCTTCGATGCGTTTCTAAACGACCGCCTCGCATGATCTCAAGCATGTTTTAATGAAAGGGCCGTGTTGAAGCGGATGGCAGACTGTGTGCATCAGCAGTGATACGGCATATTCACAGGGGACAGCATCCACGCGCTGGGAGCAGGACAAAATGGCTGATAAGAGTGACCTGAAAGCCGAACTTGAGCGCAAGAAACAGCGCCTTGCTCAAatcagagaggaaaaaaagaggaaggaggaagaaaaaaagaaaaaagagTCAGAGACCCAACAGAAAGCGGAAGCTGCTCCTGAGGATTCAGACTTGGACCGCAAGCGCAGGGAGACCGAGGCCCTCCTCCAGAGCATTGGAATCTCACCCGAACCTCCATTAGTCCCGACACCAATGTCCCCATCAAAGTCAATGAGCACACCCAGCGAGACAGGCAGCCAGGACTCTGTTGACGGAGCCGCTGCTGGCAGGACCTTGCAGTGGGACACTGACCCCTCTGTTCTTCAGCTGCAGGCTGACTCTGAGCTCGGACGTCGAACGCACAGATTGGGACCTTCTAAGATAACTCAGGTGGATTTCCTTCCCAGAGAGGTGGTGTCTTACTGTAAAGAGACTCAGACGCCGCTAGCAGCTCATCAGTCTGAAGatgaagaggaggatgaagaggtCACAGAAATGAAAGCTGGCCCAGAAAATGACCTGCAGGAGGAGGAAGAAAGCAAGGAAACAAAGGAAGGCCACCCGCGGGAGCTGACGGAGGAAGAGAAACAGCAGGTTTTGCACTCAGAGGAGTTCCTCATCTTCTTCGACCGCAGTATTCGCGTGATGGAAAGAGCTTTAGCTGAGGACTCCAACATCTTCTTCGACTACAGCGGCCGGGACCTGGAGGATAAAGAAGGGGATCTGCAAGGTggctccagtctctctctcaatcGTCTGTTCTATGATGAGCACTGGTCAAAGCATCGGGTCATCACCTGTCTGGACTGGTCCCCTCAGTACCCTGAGCTCTTGGTGGCCTCCTACAACAACAATGAAGATGCTCCTCATGAGCCAGACGGTGTGGCTTTGGTGTGGAATATGAAATTCAAGAAGACCACACCGGAGTACATCTACCACTGCCAGTCTCCAGTGGTGTCCGTGGGTTTTGCTCGGTTTCATCCTAACCTGTTGGTGGGAGGCACGTACTCGGGGCAGATTGTTCTCTGGGACAACCGAAGTCACAGAAGAACACCAGTTCAGAGGACCCCCCTGTCTGCTGCGGCACACACACACCCTGTCTACTGCGTCAATGTGGTCGGCACTCAAAACGCCAACAACCTGATCACTGTGTCCACAGACGGCCGGATGTGCTCCTGGAGCCTGGATATGCTTTCACAGCCTCAGGAGAGCATGGAGCTTGTTTATAACAAGTCTAAGCCAGTGGCTGTGACTGGAATGGCCTTCCCCACTGGAGACGTCAATAATTATATAGTAGGCAGTGAGGAGGGAACAGTGTATACAGCGTCCAGACATGGCAGTAAAGCTGGAATCTGTGAGATGTTTGAGGGCCACCAGGGGCCAGTGACAGGCATTAGTTGTCACAGTGCTGTGGGCCCTGTTGATTTCTCCCACCTCTTTGTCACCTCCTCTTTTGACTGGACTGTAAAATTGTGGAGCACAAAGCAAAACAAGCCGCTGTACTCCTTTGAGGATAACGCAGACTACGTCTACGATGTGATGTGGTCCCCCGTGCACCCCTCGCTCTTCGCCGCCGTGGACGGTATGGGTCGTCTGGATCTGTGGAACTTGAACAACGACACTGAGGTGCCCACCGCTAGCGTGACAGTAGAAGGAGCCCCCGCTCTGAACCGCGTCAGATGGGCCTCTGGGGGCAAAGAGGTCGCTGTGGGAGACTCAGAGGGACGTGTGTGGATATACGACGTTGGAGAGCTGGCCGTGCCCCACAGTGAGGACTGGGCCCGTTTCGGCCGCACGCTGATGGAGATCCGTGCCAACCGCGGGGACGGTGAGGAGGAGGGGCCCGTGGAGCTGGCCACGTAAAAACGGGATCAGAGTCATCACCAACCCAGACTGAGCCTGATGTAACACACACAATTAGCATGTCCACTAGTACTGTGCTGATTACTCCGATAGTATGGCCCGTTTATCCAGATAACGAAAAATTGGTTACTAGCAATGGGTAAAAATAGTGCATGGTTTTTTTCCTCTAAACCACTTAAACCACACGGATTCTGTTGGTCAACTCAATCAGGCCGTCACCTATCAAGAAAAGTTCAGAAATATCTTCTGTGGATCAAATCAATACAAACATTAGGCCTGCGCTACCAAGACTGTAGTGAGCTTGGGCTTTAGGTTGGGGTCGAGGGTTAGTAGGAGGTTTATTATTGTGTAGGTAGTCTGAACTTTGATTTAAATGACCAATACAGTCTTTAGAAGCAGCTGCGTGATTTGTGCTTTAACTGGTTTAGAGGACaaatcatgaataataaatatttattgacaaTTCCTAAAACCCTGAGGTTAGTCATTTACTCTGGCTGCATCTGAAATCGCATATACTCTCTGAATAGGTGGGCCTACTTACTAAAATCTTCtgtaaaatatgaatgtgtGAAGTATGAATTTAACAAAAACTTAGTTTACTGCATTAGTAGTTTCTTTAAGAGCGACTCGGCCATTTGTCCATTTTATAGGTTTGTCTTCATATTGTCACTGTTTTTACCAGTACAAAACAACTCCTTGTGTACTGCTTGATATTGCAAACTGTTGCGTCTtaccatattattttttttttatttatgtgttatcTTAAGTATGCGCGCAATGGTTTGTAGttcaaaaaattttattttattttaattttattttattttattaatttaaattttttgcactttattatttttcgtAATTTCCCTATAGCGGTTAATGAACCGGAAGTCTCACACATTTACTTCCTCTGATCCGAAATAAAAGGTCATCCGGGTACTTTCGCTCCTATTGTTTCACGAATACCGCGAGTTGGGGCATGCTCTTTCACATTTGCGATTTCGGATGCAGCCTCTGATTACAGTCACATCGTGACAATGTATTTGCGCTATGCCGTACACGTCGCTGTAAACGACatggtttttttatttgtttagttcttTTCGTAATGTGGAGGTTAATGTACGAAATTAGAAGATGTCTGTATCACGTGTTTGTCGCACCGCTTGCAACGCCACGGCGAATGAATCATGTTGTGAATGTGAGTCTGTGATGACTGTGTAAGTCCCTCTGTCGAGTGGTTCTCGAAGAATGCacgtaaaataaacattacacgACCGGTGTTGTCTAAATCACTGAAAGCTGAAATGTGACAATACAAATAACTGAAAACAGCGACTTTGAGTTCTTGAACATATAGTTTCTGGAATTAGCAGAGTGTCATATTAGCAAAATATCGACTTTATTTTACTCGCCGCTGGCGTCCCGTAATGAACGTGAATATTGAACGCTGTCGTTTAATTGACGTCAAACGCGTGCGAAATGACACGAAGGGGATTAAATGACAGAAGTTTTATATTTAGGTAAACCGTCCCTTAAATGTCGTACTCCTGGGTTTGCTACTAAGCTTTAAAATGGGTTTATTTTCCGTGCGTTTTATGTACAGTTTTTTGTTGCGCAGGagataattgtattttatgttcCGTCTCTTTACCTTGATGGCAATTAATGCTGCATCATTTAATGTTAAtaccatttttgaaaatgtgcatttcaaaaatgtgaatttgtaaTTACTTGCTGCTAGAAAGGCATCTTCCATGTTGGTTTGTGGTTATTTCAGATTACTTGGTGTGagtgtatatttttgtactgAGCCCCTGCATGAAGCATAGACAAATTAAGTTATATATAAGTTGGTGACTGTCAGCAATACTCGGTGGCTTTCTCGTCAGTGTTACAACGATGCAAGCAGGTATTGTGCGCTTACTAAAATATGTTTCACATATAGAAATAACGTTATTGAAAACCATAAGAAGTGTCtggttaaataaaacaagtattgGCAAATAAACCATGCTTCtagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195568 lncRNA upstream 12031 12556964 ~ 12557202 (+) True G132448
TU195532 lncRNA upstream 68692 12499142 ~ 12500541 (+) True G132421
TU195496 lncRNA upstream 145341 12423656 ~ 12423892 (+) False gngt1
TU195480 lncRNA upstream 171872 12378273 ~ 12397361 (+) True G132376
TU195612 lncRNA downstream 46273 12667293 ~ 12668554 (+) True G132472
TU195654 lncRNA downstream 165624 12786644 ~ 12865595 (+) True G132498
XR_006247014.1 lncRNA downstream 210621 12831641 ~ 12834525 (+) True LOC122323456
TU195692 lncRNA downstream 400417 13021437 ~ 13026026 (+) False jtb
TU195721 lncRNA downstream 480929 13101949 ~ 13102925 (+) True G132541
XM_043218314.1 mRNA upstream 13106 12552083 ~ 12556127 (+) False asb4
XM_043218313.1 mRNA upstream 13106 12552091 ~ 12556127 (+) True asb4
XM_043218300.1 mRNA upstream 20394 12511173 ~ 12548839 (+) False ppp1r9a
XM_043217057.1 mRNA downstream 77117 12698137 ~ 12700611 (+) True dlx6a
XM_043217499.1 mRNA downstream 86247 12707267 ~ 12726366 (+) True ago2
XM_043218397.1 mRNA downstream 107446 12728466 ~ 12736517 (+) True crtc2
XM_043218398.1 mRNA downstream 107446 12728466 ~ 12736517 (+) False crtc2
XM_043217292.1 mRNA downstream 118577 12739597 ~ 12761128 (+) True si:ch211-57n23.4
TU195256 other upstream 1045352 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2640760 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2930272 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3030740 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3405161 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 683986 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2166524 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2213617 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2528284 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2735720 15356740 ~ 15361845 (+) True anxa14

Expression Profile