RNA id: XM_043217836.1


Basic Information

Item Value
RNA id XM_043217836.1
length 947
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122323745
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13345591 ~ 13350048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTCTCAGAAAGTATACAGGAAGCCGTGACCGCCGCACAGGAACTTACATGTGCATATGTGTTAGTGACAGGGTGGATATGTGACAGTTTCTAAGTGTTTCAGCTTGTTTGTATCATTGTGAAAGAGACGAAGAGAAAGATGTCTGGAACACGCACCCTCTGCTGCCATGTCACCACTGCGACCATCTCATTTGCTGTCTTATATCTGACTGGTAACGTGCTGAAACTGGTGGGCATCATTCTAATGGTTTCACTGGATAAAGAGGCATTTTCTGCCCTCTATCATGAATCAAAGGCTACCAAAGGTCAGCGTGTCTttgACATCAGCACTGATATTCTGATGCTGGTTCTGATGTCCATCTCTGCTGTGCTGGTCCTTTTCTCTAAACGCAAGGGACCGATGTTTGTGCTGCCTTTTGTGCTGATGATGTTTGTGGAGCTGAGTCTGAGTTTTCTGTCCCTGTTTGCTGGAGCCTTGGGTCTGCCGGGGACCCACAACTACAGAGACATGCTGCAAGCTGTAAAAAGTCAGAAGAAAGTCGACAGGTTGAATGAAGAGGAAATCGGCCAGTTTACCATGTGGTACTCGGTTCTCTTTATGCTGGAAATACTGCTGAAGGTGTACGTCCTTCATGTGTCAATGAAGTGTTTCTATGCCCTGAAAGCAGAAAGGATGGCTGTCGTCAATGTTAATACTGGAAAAACTGTTGCAGTGAAGCTGCCATCTTATGATGAGGCTCTCAAGATGAAACCTAAAGACACTCCCCCTTCCTATCATGAGGTTTAAACTGAATGTGTGCGTCAGGCATGGttttatgcaaaatgcaaaaacccCTTTTGGGTGTAAACTGCAAACTTTTAGCTCAAATATGCACACGTATACTAACAGCATGCAGCACAAACAGGCTATGCTTACATctattacaaaataaaggtacaaaatttC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195779 lncRNA upstream 8842 13309455 ~ 13336749 (+) True sdc3
TU195751 lncRNA upstream 218974 13125877 ~ 13126617 (+) False G132549
TU195753 lncRNA upstream 218974 13125877 ~ 13126617 (+) True G132549
TU195747 lncRNA upstream 221625 13118716 ~ 13123966 (+) False G132547
TU196099 lncRNA downstream 161560 13511608 ~ 13512971 (+) True G132755
TU196098 lncRNA downstream 162974 13513022 ~ 13513896 (+) True G132754
TU196132 lncRNA downstream 204963 13555011 ~ 13556632 (+) False G132773
TU196133 lncRNA downstream 204963 13555011 ~ 13556589 (+) False G132773
TU196134 lncRNA downstream 204963 13555011 ~ 13556679 (+) True G132773
XM_043217831.1 mRNA upstream 145 13339064 ~ 13345446 (+) True LOC122323742
XM_043217832.1 mRNA upstream 1699 13339064 ~ 13343892 (+) False LOC122323742
XM_043217833.1 mRNA upstream 1699 13339064 ~ 13343892 (+) False LOC122323742
XM_043217472.1 mRNA upstream 12023 13309427 ~ 13333568 (+) False sdc3
XM_043217399.1 mRNA upstream 38163 13291297 ~ 13307428 (+) True pum1
XM_043217834.1 mRNA downstream 152 13350200 ~ 13358487 (+) True matn1
XM_043217835.1 mRNA downstream 9592 13359640 ~ 13364878 (+) True sesn2
XM_043217444.1 mRNA downstream 15904 13365952 ~ 13382526 (+) True yrk
XM_043217442.1 mRNA downstream 15905 13365953 ~ 13382526 (+) False yrk
XM_043217441.1 mRNA downstream 15906 13365954 ~ 13382526 (+) False yrk
XR_006247120.1 other upstream 40447 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 1821710 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3417118 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3706630 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3807098 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU196534 other downstream 1437496 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1484589 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1799256 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2006692 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 2029422 15379470 ~ 15379541 (+) True trnap-agg_21

Expression Profile