RNA id: XM_043217847.1


Basic Information

Item Value
RNA id XM_043217847.1
length 3424
RNA type mRNA
GC content 0.44
exon number 3
gene id pdik1l
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2119968 ~ 2130526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTTGTCATGAAACACACCTTTAACTGTTACTGTCAAGGCGACATATGAGCACGGAGCATACCTGCTCTCGTGCGATGGGGCTGCTGCAGTGTGTAAAATCATGCTTGTGtacagatggagaaaacagCGGCGCTGTGGCAGAAACAGACAAAACCGACAGGCCTTTTACACAGCACAGGCACATGACTGCGTTACTAACACAAAACGCGATTGTGTTCCTGCGATTTCTGCTTCACTGCCCTCAGTCAGAGAGTTGAACAGTGATGAAGAAGAGGATGGTGAGCAGCCAAGCCAAGTACGAGCTGATCCAGGAGGTGGGCCGGGGCAGTTACGGGGTGGTTTACGAGGCAGCCGTACGGCAGACCGGCGCTCGCGTGGCTGTGAAGAAGATCCGCTGTCACTCCCCAGAGAACGTGGAGCTGGCCTTGAGGGAGTTCTGGGCCCTCAGCAGCATCCAGAGCCAGCATCCCAACGTCATCCACCTGGAGGAATGCATTCTCCAGAGAGACGGCCTCGCTCAGCGCATGAGCCACGGCTCCAGCTCCTCGCTCTATCTGGAGttGGTGGAGACTTCCCTGAAAGGTGAGATCGCATTTGACCCCCACTGCGCCTACTACCTGTGGTTCGTCATGGACTTCTGCGACGGTGGAGACATGAACGCCTATCTCCTGTCCCGCAAACCCAGCCGAAAGACCAACACCAGCTTCATGCTGCAACTGGGCAGCGCACTCGCCTTCCTCCATCGCAACCAGATCATCCACAGAGACCTCAAACCTGACAACATTCTCATCTCGCAGGGCAGAACCCCTGCTGGGTCCCCAGAACCCACCCTAAAGGTGGCTGATTTCGGCCTCAGCAAAGTCTGCTCTTGTTCTGGCTTGAACCCCGAAGAACCGGCAAGCGTCAACAAGTGTTTCTTGTCCACAGCGTGTGGGACAGATTTCTACATGGCCCCTGAGGTCTGGGAGGGCCACTACACTGCAAAGGCTGATATTTTTGCATTGGGGGTCATCATATGGGCCATGGTGGAACGGATTACGTTTGTGGATGTAGAGACTCAGAAGGAGCTATTAGGGAGCTACGTACAGCAGGGGGAAGATATAGTCCCATTGGGAGAGGCTCTGCTGGAGAATCCTAAGATGGAGCTCCACATCCCGGCACGGAAAAAGAGCATGAACGCTGGCATGAAGCAACTGATTCGGGAGATGCTGTCTGCCAATCCCCTGGAGCGACCTGACGCCGTTGAGTTGGAGCTCAGGCTGGTTCGGATCGCATGCAGGGAACTTGATTGGGATACGTGAAAGGACAGCATCTTGGATATGGGGTAAACTTCTAGGACAATGGGCTTTAAGCTTGAAGTGAGAACACATTATTTGCCCTTGTCCCAAATGGCACACAGGGGTCTTGTGGTCTTTAAACCCTGCTCCTGAAGAAATACCATCCTGCAGACCTCAGCTCCAACCCTGTTCCCACACACCTACCTGTAATTAAGTAAACCTGAACACTTTAAGTAGCTGGTTCTGGTGCATTTGATTGGGGTTGGAGCTCTGCAGGGAAGTAGCTCTGGGGTTAAATATGCCTGCAGTAAGGTTTCCCATTTGGGAATTCAGTTTAGGCTCCATTTGCTGAGCCCACGATTACCAGTGCTACAAagtataaaaacctttttgtagAGGAATGACCACATAGGCTGGTGGTGCTGTTTGGGACAGGGCCttttggagtgtttttttttttttttttttttttttttttgtgggcgATTGcactggtctttttttttctctcaatggTTTTCTTACAGTTTAGTACaacttatttattgattatcAACAGTCTTTAATATGTTAATGCTTATTATGGTCTCACCTGTTCAGAAACACACTGGGACTTTCATCAGTGAGGGTCCAGGTGGGCTTCAGTGGGGTTTCATTGATGGAAATACCAGATATCCACCTTCCATTGACCATAAACCAGAACATTCCATCTCATTCCATCAAGACATCAGATAGTATGTAGATTAGGGCTGGGCTAAAAATGAAGagttcaatatttttattttggtggtgTCTGATTTACTTTCTTTGCTCATGATGGCTAGAAAAATGGcgatattaataattttttttgccacttAACAACATAAGAatgaatatattgtatatattcaAGTCAATGCCCAGCCCTGATGTAGTTTTAATACAGCACAGCAAAAAGACTCGTGGCTTCCATCTTTCTTGGGGATTATTCCCTATGAGAGCTACTCTCACCACAATCCCGGTGCTAATTCAACTTGTAATGCAAAGTGGACAACATGCAGCAAATAACGGCTTTTTTTTACAGCCACCTTTTTTCCAGTCAATTTAACAGCTTTTTACAACAGGATTAatatgtttttctgttcttcACACTCAAAAGGGCTTCAGGGAGTTGTATTTCTATCACTCAATTAAAAAGAATTCTGCAAAAACCATCAAGGCAATAGTTTACATTTGGACAAGATATTCAGCAAATTATTCTGTAATATGTGATCCTGCTGAACAAGTGACgcattttagtaaaacaaacaaaacaagattaaaaaaagagtgcTTTCAAGATCAAGTTTCAAGGCATTTCAGACAGTGTCTGATAAACGAACACAAAAATATTCTGTCTTTACCTCTTGCTGGACACTGGTTTTGCCGCTAAAAGcagctgtgtgtatgtgtgaactGTGTGTCCATTATGGAGCACCAGGTGTAAAGCAAACTAAAGCCTCGATTTGAGGGGCTGAGTTCATATTCAAAAAGAAGCACGCAGGAACTTTCAACAAAGAAGTGTAAAATGGGAACGAACAATTATGGGCACTTTTTTTCAATGCTATTTCTGGTATTTCTGTCTGACAGGTTAAACCTTGATGAACCGGTTTGAGTGGTAATTTAGTAAACATTgagattttgttttcaaaaaattgAGGAAAGGGTATGGAATTTACTTTATGCGAAGCTGGCAAATTTGAActttattcttcaaaatactttttcaaacGTCATCAAAATGTTGTATTCAGAAAATTCCTGCTGCCCACTGACTTTGTTTGGTTTGGAACTACATGCAGggaagtaaatgttttaattttggggcAATTTTTGTCCTTTTAAGAGAGTATTGgtgattttaattgttttaacttAATTTGTGCCCTGTTTTGTTGAAAGTACCAGCTGCTCTTTCAGACAACACAATGACTGCTGACTGATCTACGAATTTACTTAAGGCGTTACTCAAcctcaaaattttaattttgtcattaaccACTTAcgcccatgtcattccaaatccattaaagctttgtttgtcctcagaacacaattttaagatatttggGATGAAAACCAAAAGGCTTGTCCCATTGAATGCCAAGTAATAAATACTGTCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K17539 PDIK1L, CLIK1L; serine/threonine-protein kinase PDIK1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191780 lncRNA upstream 37642 2082278 ~ 2082620 (+) True G129886
TU191775 lncRNA upstream 63380 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 148470 1966740 ~ 1971792 (+) True LOC122323678
TU191728 lncRNA upstream 154574 1870158 ~ 1965688 (+) False thrb
TU191670 lncRNA upstream 415730 1700588 ~ 1704532 (+) True G129795
TU191792 lncRNA downstream 9366 2139892 ~ 2141305 (+) False ppp1r8a
TU191825 lncRNA downstream 134691 2265217 ~ 2265435 (+) True G129916
TU191849 lncRNA downstream 212509 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 220772 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 248557 2379083 ~ 2379355 (+) True G129947
XM_043217319.1 mRNA upstream 4759 2102744 ~ 2115503 (+) True lin28ab
XM_043218516.1 mRNA upstream 88077 2026415 ~ 2032185 (+) True sf3a3
XM_043217495.1 mRNA upstream 129353 1987321 ~ 1990909 (+) False nkiras1
XM_043217844.1 mRNA downstream 4126 2134652 ~ 2141332 (+) True ppp1r8a
XM_043217845.1 mRNA downstream 4126 2134652 ~ 2141332 (+) False ppp1r8a
XM_043216947.1 mRNA downstream 23309 2153835 ~ 2181727 (+) True foxo6b
XM_043218231.1 mRNA downstream 180744 2311270 ~ 2318033 (+) True ctps1a
XM_043218444.1 mRNA downstream 191875 2322401 ~ 2327881 (+) True rab42a
TU191722 other upstream 146878 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 447921 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1013689 1072151 ~ 1106573 (+) True G129682
XR_006247126.1 other downstream 199615 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 655399 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 759163 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 840161 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 962541 3093067 ~ 3093714 (+) True G130077

Expression Profile