RNA id: XM_043217850.1


Basic Information

Item Value
RNA id XM_043217850.1
length 4739
RNA type mRNA
GC content 0.47
exon number 29
gene id LOC122323753
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12165085 ~ 12184252 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTACGCGTGTGTGCGTTTCCTGGATGTTTTAACCGAGAGAAAGCCATACGGCTCCGTCCGGCGGCATCCTCGCAGGAGGAAAGTTTGACTTTTCACACGTTACCGTTGCATGACCCAGAGAGGCTGAAGCTGTGGCTCCTCGCTCTCAAACGGGATATAAATTCACCCATTGAAAATATCCGGGCGCTGAGAGTGTGTAGTGACCATTTTTCGCCGGACGATATCACTGGGCTGACACGAAGATACCTGAATTCATCCGCTGTGCCTAGACAACAAACGGAGGAGACTGGGATCGAACCAGACGCCCTGTCGGCAGACAACAGTTGGGATACAGAGGAAGATGATGAAGTTTATTATGCAGATGATTTTGAGTCAACTTCAGGAAAGCAGAAGAACCCCAGAATCTGCCATGAACAACGTGGTAAACTCATTTTGAATGTTACAAATCCACCTACAGAGCCATCTACATCTCTCTCTGCTTTCGGGTCCTACTATGCTCTTCCACCCACATGGCACTACCAAATGGATGATCCTGCTGAGGCTGGGCTGCAGAtggaagaatgttatgatctaAATGCCAACATGGATTCCGTTGCTTATTCAGAAGATGAGAACTCTGGGTTGGGCTCTCCATCTGCAGCAGATGTCTTTATGGCCAGTGAGGATTTTAAAGGGCATCCAGACATGTGCCAGGGGGAGGACATGGCCCAGTGTTCAGAAGAGCTTGTGATCACTAAAGTTGAGGACACTAATGAAATGGCGCTGGACCAGAATGAAGATTACAATGGGATGACAGAAGTGGATGAATCAGAAGATTCAGAAACACAGGGAGCCAAAGACATAAAAAGCAGGATTATGGAATCGTCTGCTGAAATGACCGTTTACAAAGAAGTTAAAGTGACCCAACCCTCTGTCAATATGCTTTTGAAGATCAAGGATGAACCGCTGGATGAGGAATGGAAAAAAGCACCACATTCCCCAATGGGAAACATTAAGGATGATGAGGATTTTGACGAAGCCACAGATAATCTCAAGATACAAGAAGCTCCAGTAGACGTCCCAGAAAAGGCAGCATCATTCCCAGCAAAATCCATTCAACCTTTAAAAAGACATGGTGTGTTGTGCACAGCCTGTAATAAGGTCATGCTGAAGGGACACACAGCATTTCAGCGTAGCGGCTCTTTGAAACTCTACTGTTCGCCTCAATGTCTCTGCAACTCTAAGAAGAGAACATGTCACTGCTGCCTTAAAGAAATTAATGATGACAATATCAAAATTACCCTGGTAGACATGTCAGGGACTGTGAAGGAGTTCTGCAGTCAGAAATGTCGCAGCGCTTCAAACTTcatgtgtagtgtgtgtgagaagacAGGAGTGACTCATAGTCATGAGGTCAATTACATGGGCTCCATTCATAAGCTGTGCAGTGACAGCTGCTTCAACCAGTTCCGCTCCTCTAATAAGCTGAACATGAACAGCTGTGTGAACTGTGGAGGATATTGCTATGGCACAGACAGTCAGTGTCCGTCTCTACGGATGGAGGATAGAGTTATGAAGTTCTGCAGCCAAAACTGCCTCACGGCCTACAAAAAGaggagtCTGAAACTTGTCACCTGCAAAATGTGTCATGCCCTGCGCCCAGCTGCAGATGCGGTGGACAGTCCAAACTCCGAGGGCGTCAGGGAGCTTTTCTGCTCCACTTCCTGTGTCATGGCAAGCAAAGTCCAGACTGGCAGTTCGTCAGGTGTTGCAGTGGAATGCAGCAACTGCAAGCTGAAACTAGTGCCTCAGTACCACATATCCACGTTTGATGGATCCGTTCAGAACTTCTGCTCTTATTCCTGTGTACTAGCATATCAGGAGTCCTTCAATAAGACGAAAGCTAAAAAGCCAGTAAATACAGTAACCTCCACAAGCACCAACACATCTTCCCCAAAACCTGCTTCCTCAGAGTCCAGCTCGTCAGCGAAGACCAGTACTTCCGGTGGTTCGACACAAACCGTCACCAAGATCCCCTGCTTTCAGTGTCTGAACTTCTTTTTCCACAGACCAGAGCTGCTGGAGTTTAGGAGGAAAATGTACGCTTTCTGCAGTGACACTTGTATTGATGAGTTCAGAAGGATCTACCGCATGGAGGCTCGCTGTGAACACTGCAAACTGGATAAAATCGTAAAAGTAGTGAGAAGGATAAACAAAGTTGACCGTTCTTTCTGCAGTGAGAGATGCAAGACTCTCTTTGAGCATAGCCTGTTCAAACGCTGGGGAAAGAAACACTGTTGCAACTGCTTTTACTGTAACAGCACTTCTAAGACTGTAGTGACTGATGTCTTTGACGGGAAGCAAGAGGAGTTCTGCGGGAATGATTGCTTGTTAAAACAGAATTCACTGATGCGTcagGAAGTAAAGTGCTCAATGTGCAGGCAGGCCAAGAAGATAACGGATACTGTGAAATGGCTGGGTGAGATGAAGCATTTCTGCAGCCTTCGGTGCCTGATGTTCTTCTGCAGTCTGCAGGGCATCACTGGGGTCGTTTCAAATAAATCTACAGCCACACAAGGTGTGACCCCAGTATCCTCTGCAGCTCCTCAAAGTACTAAAGAGGGCACACCAGTCATTGCCAATGTCGTCTCACTTTCAAGCGCGTCCGACAAAAAGCCAGGTGTTTTGGAAAACGCAGATCCAAAAGGCTCTGTTCCTGTAAAAGTCACAGGAAATAAGTCTGCCGTGAAAGCTCCCGTCTCTTCATCCCAAACACAGAAAGACAAGGACTTGCCATATAAATCCATAAGCAAAAACAAAGCCACATCCTGTAAACCTCACACCTGCGATGCTGACACACAAATAGATGGAAGTCCTAAAGTGATAGTGCTGCCTGTGCCAGTGCCAGTGTATGTGCCAGTTCCCATGCATCTCTACGCTCAATACATTCCACAGTCTGTGGGGCTTCCACTTCCGGTTCCAGTGCCCTTGTTCTTCCCTACAACTCTGGACAATGCCGAACACATTGTGAAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGACCCGCTGGAGGCCGACCTCATCATGATGGCAGAGATGGTGGCTGAGGATGCTGAGAAGGAGAAACAAATCATCACTAGTGATCAGACTAGTAATATAATGGAGGACCTTGATTTGGAAGATCTATCCAGCAACCTGAGTTGGGAGGAGGACTCTGTGTCTTCAGCGCAGACGTGGGATCAAACCCCTGAGCCTGAGAGACCTCCTCCATCTAGATCTGCCACACTGACCCCCGTCTCCACCGCCGCAGAGGAACCACAGATGGACTTGGAGGCCGATTTCCCGATCGAGAGCATTGAACGTTATAGAAAGCAAATGCAAATGGAGATCCATTCTGGCAAACAGAGATCACGCAAGAGAGGACATGATGGCTTCCCTGAGAAGAAACAGGGCAGTAAGTGTGCATCAGCACCTCCAAAAAGCCTCTCTAAACTGCAACATGAGTATGGAGTCAAAGCCTGGAAGAAGTGGGTGCGCTGGAGGAACACCCAACCCAACATGGAGGCTCTCAAATTTGGCTCTCGAAATATGACACTAAAGGAGGACTTGTTAAAGTGCTGCACTGCTGAACTCAGCTACGGCCTCTGCAAGTTCATTTCTGAGGTTAGTCGACCCAACGGAGAGAAATACAGCCCTGACAGCATCTTCTATCTCTGTTTGGGAATCCAGCagTACCTGTTTGAGAACAATCGGATGGAGAACATCTTTGCTGATGTCTTTTACGCCAAATTCTGCCATGAAATGAGCAACGTACTTAGAGGGTGGAAGCCAACTATTTTGTCCAGTGGTTACGTTCACTCTCGTGTGGAGGAGTATCATCTGTGGGACTGTAAGCAGCTGGGGGCGTTTTCACCCGGCGTGCTGCTCAACACGCTGCTTTACTTCTTCACTAAGTACTTCAGCTACAAGACCGTGGAGCAGCACCGGCGCCTCTCTTTTGGCCACATCAAACGCTACTCTCGAGGACAAGCCAACAACAAAGTGTCCTTCCTGCGTTTCTATCCCCCGAAAGAGGACGGAAGCGCGGATGGTGTCCCtgtaaagaagaagaagaaggaaggTGAACGGCAAAGGGTGCTAAAAATACGGCAGAATTCAGACAATCCTCTTCGCTGTCCTGTCAGGCTATACGAGTTCTATCTCTCAAAATGCTCGCCCGGCATAAGACAAGACACAGCCCAGTTTTACCTGAGCCCCGAGCGCTCCTGCGTACCCAGCAGTCCCACGTGGTTCTCCACCACCTCCTTGAGTGATGAAGTTCTGGACAGCATGCTCACACGTATCCTTACTGTCAGAGAGCTGCACctggagagagaaaaatcacCCAACGACACGGATTCAGACAGTGACTCGGACTTCACAGCCATTTAGCACCACGATACTGAGAAAACCTGATTGCGTCTTCTGGGATTTTGACTGTTTTGAATGCTGGAAAGCAAGTggtttatcatttcattttcattttcaatcttGTTTTAGTTATAAGGACACACACCGTTACAGTGGGATTATTGTAAGTTGCCacttttgtattatatttaaacactAAAGACATTGACAGCATCATTCCAAAAGCAGATTTTgaaattgttgtttttcattgcaAGCCATGTTGGTTTAAATAGAAGGAATGTTTCTGAAAACTGACTCTTGATGCccttttttatgcataaaagaaaaactgaaactcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195383 lncRNA upstream 56229 12114759 ~ 12115354 (+) True G132305
XR_006247061.1 lncRNA upstream 57838 12112991 ~ 12113745 (+) True LOC122323790
TU195382 lncRNA upstream 59586 12111527 ~ 12111997 (+) False LOC122323774
XR_006247060.1 lncRNA upstream 64913 12105788 ~ 12106670 (+) True LOC122323789
XR_006247065.1 lncRNA upstream 67770 12103312 ~ 12103813 (+) True LOC122323793
TU195390 lncRNA downstream 6486 12190738 ~ 12192364 (+) False G132311
TU195392 lncRNA downstream 6486 12190738 ~ 12192364 (+) False G132311
TU195393 lncRNA downstream 6486 12190738 ~ 12192364 (+) False G132311
TU195394 lncRNA downstream 6486 12190738 ~ 12192364 (+) True G132311
TU195378 lncRNA downstream 13425 12197677 ~ 12199695 (+) True G132301
XM_043217852.1 mRNA upstream 7705 12145753 ~ 12163878 (+) True LOC122323754
XM_043217862.1 mRNA upstream 31799 12121395 ~ 12139784 (+) False sfpq
XM_043217861.1 mRNA upstream 31799 12121396 ~ 12139784 (+) True sfpq
XM_043217863.1 mRNA upstream 31799 12121396 ~ 12139784 (+) False sfpq
XM_043217884.1 mRNA upstream 51689 12118492 ~ 12119894 (+) True LOC122323779
XM_043217866.1 mRNA downstream 2389 12186641 ~ 12190024 (+) True rbm48
XM_043217867.1 mRNA downstream 32713 12216965 ~ 12245745 (+) True cdk6
XM_043217872.1 mRNA downstream 65718 12249970 ~ 12253702 (+) True fam133b
XM_043217865.1 mRNA downstream 69594 12253846 ~ 12263779 (+) True hepacam2
XM_043217854.1 mRNA downstream 80701 12264953 ~ 12367049 (+) True vps50
TU195256 other upstream 647702 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2243110 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2532622 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 2633090 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3007511 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1120754 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2603292 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2650385 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2965052 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3172488 15356740 ~ 15361845 (+) True anxa14

Expression Profile