RNA id: XM_043217852.1


Basic Information

Item Value
RNA id XM_043217852.1
length 5200
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC122323754
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12145753 ~ 12163878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCATAATGCATTGCAGCACGCCGACGGGGAAGAGCTTTCGCGGGAGTGCGAGGCAACCCGTCCAGCTAGTTAGGTCTGTTTCAGCAACTTTTGCGGTATTTCGATGTTTTATTGCAGAAGTAATCAATCGTGCATCTCGAAGGGGTTGTTTGTCGACCGCGTTTCGAGAGGGACTGTTGAAAGAACACGCCAGCCTTGTTGAGGAGAGCAGTCTGGCCCCACACAGTCTACAGAGACAGTTTCACCGCTGGGCTCTACGTCTGTCGCAGGTGTCCCTATGTCTAGTGACGATTCAACTGAACAACTTCCAGGAGATGCAGCTGGTTCAGAAGTGAAACCAGATGCAGTGGAGTCATGTCTGCTGGATGCCACCGATGCTGGTGAAAATGAACCGAGCCTTCAAAACAGCTTTACGGAAAGCCAACAGACGAAACAGGGGGTAGAGAAGTTTCCAAAGGAGATGGAGGAAGATCCAGATGTGAGACAACAGCCGGATATGGACCAAGAAAACGGACCAGAAAAGAGCAGCGTAACTGGCCAGAGCGAAGAAGAAAACTCAAAGCAGAAGAACGCTGGAGAGGCAGAGAAGAATGAAGTGAGGAACATCGCAGTAGATGCGGCGCAGTGTTCAGAAGAGCTTGTGATCGCTAAAGTAGAAGACTTCACTAATGAAATGGCAATAGATGTGGACTCAGCTCAGGATCTTGATGGGAAGATGGAGGTAGATGGATCAGATGATGCAGgaAAATCTTTGCCCAAAccaataaaaagagagaaagcggAACCGTCTGCTGTGCAAACACGGTCGATGTTAAAAACTGAGATGAGAACTCAAGCGGCCCAGCTCTCTGATGCCCTACCAGTGAAGGTGAAGGATGAGCCGATGGATGAGGAATATGAGAAAGCGTCTGTGTCGCTGCGCCCAGAGAGAAACATCAAAGATGAGCCTGACACAGCTGAGTTCAACCAGACATCTGATTCGATCAAGATCAGTGCAGTTTTCTCTGTGGGAGGAAATGCCACATCCATTGTTCCAGAAGCTGCTCCTTCAAAGGTGGCACCGGTCCCTACACTATCCCTTCGTTCTCTGGCCCCCGCCAATCCAATTGGTGTGGTCTGCACAGGGTGTAACAAAGTCCTCTTAAAGGGACAGACGGCCTTCCAGCGCAAAGGCTGTCCTAAACTCTACTGCTCACCTCAGTGTCTCTGTAGCACCTCTAATGTGGTGGTCAAGTTACCTCAGAAGAAACAGTGTCACCACTGCCAAAAGGACATTGTTGACCTGAAGGATGTGATCAATGCCCCAGTGGACTTGTCAGGGACACTGAAGGAGTTCTGCAGTCAAAAATGCCTCAGTGCTTTAAGCTTCAAATGCACTGTGTGTCATAAGACGGGAACGACTTACACTCACGAAGTGAACTCATTGGGCTCCATCCAAAAGCTGTGCAGCAACAGCTGCTTCAACCAGTTCCGCTCCTCTAATAAGCTGAACATGAACAGCTGTGTGAACTGTCGGGGACATTGCTATGGCACAGACAGTCAGTGTCCGTCTCTGCAGATAGAGGGCCATGTTATGAAGTTCTGCAAACAAAACTGCCTCGTGGCCTTCAAAAAGAAAAGTTTGAAACCTGTCGCCTGCAAAATTTGTAATACCATGCGCCCAGTTGCAGAAATGGTGGACAGTTCAAGCACAAGTGGTGTCAAGGAACTTTTCTGTTCAGCATCCTGTGTCACAGCGAATAAAGTTCAGACTGTCAGTTCTTCAGGTGCTCCAGTGGAATGCAACAGCTGCAAGCTTAAACTAGCACCTCAGTACCATCTAGCCATGTCTGACGGAACCATCCAAAACTTCTGCTCCTTTTCATGTGTAGTATCATATCAGgAGTCCTTCAGTAAGATAAAACCTTTTGTGCCAATAAATGCTGTAACCTCTACAAGTAACAACACACCTACCCCAAAACATGCTGCCCCCAAACCTGTGCCCTCAGAGTCCAGCTCGTCAGCGAAGAACAGTACTTCAAGTGGTCCAACACAGACGGTCACCAAGATCCCGTGCTCTCAGTGTCTGAACTCGTTCTTCCACAGACCAGAGCTGCTGGAGTTCAAGAGGAAAATGTACGCTTTCTGTGATAATAGTTGTGTTGAGGAGTTCAAACAAATCAACAATGTGATGGCTCGCTGTGAATACTGTAAGATTGATAAGGTTGTCAAGGAGGTCAAAAGGATAAACAAGATTGACCGCAGTTTCTGCAGTGAGGGATGCAAGTTACTGTATAAACATGACCTGGTGAAGCGCTGGGGGAAGAAACACTGTCGcaactgtttttactgtagcgGGTCCTCTCAGGCCCTAGTGACTGAAGTTATTGATAGCATAGAGCAGGAGTTCTGTGGGAACATATGCTTATCACAACACACCTTACTGATGCGCAAGGAAATAAAGTGCTCCATGTGCAGGCAGGCCAAGAAGATGACGGAGACTGTGAAATGGCTCGGTGAGATCAAGCATTTCTGCAGCTTGCAATGCTTGATGTTTTTTTGCAGTCTGCAGGGAACCACTGGGGCTGTCAGATCTGCAAACAAGACTTTTTCCACACAAGGGACAAGCCCATCATTGTCTCCAAGCCCTCAAAGTACAGTTAATCACACACCACTGGTAACCAAAGAGGCCACACCGGTCATTGCCAGTGTTATATCACTCTCCAGTGCGTCCAATGGACAGCCAGGTGTTCTGGGGAACAGCGTCCTGCAAGCCTCAGCTGCTACAGCAAAAAGTTCAGGAAatGCGGCCAGCACGCAGACAGACGGTGCGAAGGTTTCTGCGCCACCACCTCGAATCCTGAAGAACAAAGCCTTGCTGTGTAAACCATTAAGTCAAAACAAAGGCACATCTTGCAAACCTAATGTCTGTGACATGAACACACAAACAGATGGACCTTCCATGATGGTTCTGCCTGTGCCGGTGCCAATCTATGTTCCGGTTCCCATGAATCTCTACACCCAATACACTCCGAAGTCTGTGGGCCTTCCACTTCCGGTTCCGGTGCCCTTGTTTTTCCCCACCACTCTGGACAGTGCCGAGCGCATTGTGAAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGACCCGCTGGAGGCCGACCTCATCATGATGGCAGAGATGGTGGCTGAGGATGCTGAGAAGGAGAAAAGCATCATTGTTACTGATCAGACCAGTAATATAATGGACGATCTTGATCTGGAAGCCTTATCCAGCAATCTGAGTTGGGAGGAGGACTCTGTGTCTTCAGCGCAGACGTGGGATCAAACCCCTGAGCCTGAGAGGCCTCCTCCATCTAGATCTGCCACACTGACCCCCGTCTCCACCGCCGCAGAGGAACCACAGATGGACTTGGAGGCCGATTTCCCGATCGAAAGCATTGAACTTTTCAGAGCGCCAACTCAAACGGACACAACAGATTCTGGCAAACGGAAATCTCGCAAGAGAAAACATGACGGCTTCCCTCAGAAGAAAAGGGGCCGAAAGAGTGCAGCTGTTGTTCCAGTCAAATCCGCACCAGACCTTTCTAACCTCGCAAAACTGCAACACGAGTACGCTGTGAATGCTTGGAAGGAATGGGTACGCTGGAGGAACGGCCAACCCAACATGGAGACTCCCAAATTTGGCTCACGCAGTATGACACTAAAGGAGGATTTGTTAAAATGCTGCACTGCTGAAATAAGCTACGGCCTCTGCAAGTTCATTTCTGAGGTTCGTCGACCCAACGGAGAGAAATACAGCCCTGACAGCATCTTCTATCTCTGTTTGGGAATCCAGAAGTACCTGTTTGAGAACAGTCGGTTGGAGAACATCTTTGCAGACGTCTTCTACACCAAATTCTGCCATGAACTGACCAGCATACTCAGACAGTGGAAACCAACTATTTTGCCCAGTGGTTACGTTCACTCTCGTGTAGAGGAGGAGTATCTGTGGGACTGTAAGCAGCTGGGGGCGTTTTCACCCGGCGTGCTGCTCAACACACTGATATACTTCTTCACTAAGTACTTCAGCTACAAGACGGCGGAGCAGCACCGCCGCCTCTCTTTTGGCCACATTGTACGCTGCTCCCGGAGCAAGGGCAACACAAAAGTGGCCTGTTTGCGTTTCTATCCCCCGAAAGAGGACACAAGCACAGctgGCGTCCCTGCAAAGAAAAggaaggaagaggaggatgaaaaTGACACTGTATATGAGATAAAAGAGAATGCAGACAATCCTCTTCGCTGCCCTGTCAGGCTGTATGAGTTCTATCTCTCAAAATGCTCACCCAGCGTGAGGCAACGCACAACCGACTTTTACCTGAGCCCCGAGCGCTCCTGCGTACCCAACAGTCCCATGTGGTTCTCCACCACCTCCTTGAGTGATGAAGTTCTGGACAGCATGCTCACACGTATCCTTACTGTCAGAGAGCTGCACctggagagagaaaaatcacCCAACGACACGGATTCAGACAGTGACTCGGACTTCAGGCCCTGACTTTGAGATGCGACTCACGTCATAAGCTCAAACCAAATTTGCAAAGTGAAGAAGGTATCTCAAGTTTGTCCTATAGATGGTTCTCTGAGTATTGTTACCAAGCTGACAAAATCTGGATGCCATTAAATGGGCCTTTAGGATACTGATAGAGATTCCAGTGGATGGAAAGTGTTTTGTCATTGTATTTTCCATGTTTAATTGGATAGTAGTTATGAGGCTgtacagtgtgtttgtgtatgaaaAACTATATTTGACAAAAGCAGCTTAcgtaagaaaaagaaaacattcaaaaggtGCATACGGTTGTATGGATTTCATTTACAGGACAAAGCTGATTTTATGTAATGCCACGTTACACACAAGTAGTATTTGATGGGGTTTCTGCCCATTCTTTGTATCATATTGAAACACTAAAGACATTGAAAGCATCCTTTTACAACAGGCATTAAAAACAATGGCTGGTGTATCTAGCCCTAAAATTAATACTGAGgtcttttggcttttttttttttttttttttttttctttttccaaccTAAACACTGCAGGATTTCATAATTCTTGTATGGacaaggctgcatttctttGGATAAAAAGGACAATGAAACTGTCTGTGAGTCTTTTTTCCAACATACTGCTCATATACtgtcatatattaaaaattgctaTCAAATGAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24675 ZMYM2_3_4; zinc finger MYM-type protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195383 lncRNA upstream 30399 12114759 ~ 12115354 (+) True G132305
XR_006247061.1 lncRNA upstream 32008 12112991 ~ 12113745 (+) True LOC122323790
TU195382 lncRNA upstream 33756 12111527 ~ 12111997 (+) False LOC122323774
XR_006247060.1 lncRNA upstream 39083 12105788 ~ 12106670 (+) True LOC122323789
XR_006247065.1 lncRNA upstream 41940 12103312 ~ 12103813 (+) True LOC122323793
TU195390 lncRNA downstream 26860 12190738 ~ 12192364 (+) False G132311
TU195392 lncRNA downstream 26860 12190738 ~ 12192364 (+) False G132311
TU195393 lncRNA downstream 26860 12190738 ~ 12192364 (+) False G132311
TU195394 lncRNA downstream 26860 12190738 ~ 12192364 (+) True G132311
TU195378 lncRNA downstream 33799 12197677 ~ 12199695 (+) True G132301
XM_043217862.1 mRNA upstream 5969 12121395 ~ 12139784 (+) False sfpq
XM_043217861.1 mRNA upstream 5969 12121396 ~ 12139784 (+) True sfpq
XM_043217863.1 mRNA upstream 5969 12121396 ~ 12139784 (+) False sfpq
XM_043217884.1 mRNA upstream 25859 12118492 ~ 12119894 (+) True LOC122323779
XM_043217981.1 mRNA upstream 27171 12116530 ~ 12118582 (+) True LOC122323874
XM_043217851.1 mRNA downstream 1207 12165085 ~ 12184252 (+) False LOC122323753
XM_043217849.1 mRNA downstream 3966 12167844 ~ 12184252 (+) True LOC122323753
XM_043217850.1 mRNA downstream 7705 12171583 ~ 12184252 (+) False LOC122323753
XM_043217866.1 mRNA downstream 22763 12186641 ~ 12190024 (+) True rbm48
XM_043217867.1 mRNA downstream 53087 12216965 ~ 12245745 (+) True cdk6
TU195256 other upstream 621872 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2217280 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2506792 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 2607260 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 2981681 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1141128 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2623666 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2670759 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2985426 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3192862 15356740 ~ 15361845 (+) True anxa14

Expression Profile