RNA id: XM_043217859.1


Basic Information

Item Value
RNA id XM_043217859.1
length 3273
RNA type mRNA
GC content 0.46
exon number 17
gene id calcr
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12380444 ~ 12415751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAATCCCCGCGAATCATCTTCACGCTGACTAGCCTATAATATAACGCTAATACGTTCCCGAGGCAGTCTGCCTACCCGCACAGCCTATCTTGCGAATGTTTCTCCGACACTGAGAATGCTGTCTGTAAAGGCGGCTCACTAGATTTTGAAACACAGCCTCACCGTGTCTTTAAGCGAGCTGGAGCCCGCTGTCAGTGATTCTAGGAGGAGCCCACACGCTCCACATGCTCGGCGAGATATGAGCGGCAGTTAGATGCACTTGGATTACTGGCTGCTGAACTGAAACAACGTCTCCgctcataaaaaatatgtaaaacagtGACGTTTCTGATTAcacgtctttttttttaacgagtGGATATTCTCCTCAGTCGGAGATAAAACACGCGATGCAGTGAAAGCATCACTTATTTTAGTCCCAGACGATGGAATTCAGTTTGAAAAGCCCAGCGTGAGAAAGTGAAGTACGCGCAGGATTTACATTCTCACCCATTTTACGATAGTCAGTATCCGAGAGCATGGGTTGGCAAGAGACCCTATGGCTTTTGGTATCATTTATCTTGGACAAATGGTTTTCCCGACTGACTTGGGTGGTGGCCTGGTGGTCGTATGTATGACGTCATTTACTTCAAAGTTTGGAGTGACATCATATGTACGGCTGCTAAACTGCTACATGGGACATCAGAAACCTCACTGATGAATTTGGTGTTGTAAATGCGTTATTGTGTGGAGaGTGCAACAAAGGCTGGAACAACAGAGACGAAAGCAGAGCCCAACGTCGACTTATCCCTTACTCCTGTTATGATGGCAATGGAGGGAGAGAGGCTGATCATGACTGAGTCTCAGTACAAATGTCTGGAGCTTCTGAGCCAAGATGGATCCCATAATAAAACAGGTTCGTTCTGCAGCAGATTCTGGGATGGCTTGCTCTGTTGGGATGAAACACCAGCTGGAACCTTTGCTTCACAGAACTGCCCAGACTATCCCAGCTTTGACCCCTTGGAAAAGGTAACCAAATACTGTGATGAATCTGGCAACTGGGTACACAGTTCATCCATCAATAAGACCTGGTCCCACTGTCTCACATTCTCAAAGGagaaaataaagACGTTACCAGTTCATGGCTTTTTAGAGACGGAGACGGAGATGGATCCCACCGCTGAGAGTCAGGTCAGCCCTGTAGTGACTCAGAAAGCGGAGGAGAGGAAGAAGATCATCGATGGTCAATATAAATGCTTTGAGAAAATGAACAGAGACCAGCCATATAACAAATCAGGTTCATACTGCAACCGCACGTGGGATGGGTGGCTATGCTGGGACGATACGCCGGCGGGAACATACACATCTCAAAACTGCCCCAATTACTTCCCTGACTTTGACTCTACTGAAAAGGTCACCAAGTATTGCGATGAGACAGGAAACTGGTTTAGGCACCCTGAGACAAACAGGACATGGTCCAACTACACCCTTTGCATTGCTCACACCAAGGACAAGCTCAAGatggcgtatattttgtattatatggCGATTGTGGGTCATGCTCTTTCTATAGTGTCCCTTCTCATCTCTCTGgccattttcttttatttcagGAGCCTGAGCTGTCAGAGAATCACGCTACACAAGAACCTGTTCTGCTCGTATGTGCTCAACTCAGCCTTCACCATCGTCAACCTCATAACTGTGGTCAACAACCCCAAAGTGGTGCAGAGGAATCCGATTGGCTGCAAGGTGCTTCACTTCTTCCACATGTACATGCTGGGCTGTAACTATTTCTGGATGCTCTGTGAGGGGATTTACCTGCACACGCTGATTGTGGTGGCCGTTTTTGCCGAGGAGCAGCATCTGCACTGGTATTATCTTCTGGGCTGGGGATTCCCCTTGGTGCCTGCATCCATCCATGCTGTGGCGAGGAAGAAATACTTTGATGACAACTGCTGGATGAGTGTGGAGACACATCTGCTCTATGTGGTTCACGGCCCCATCATGGCAGCTTTATTAgtcaatttattttttctgctgAACATAGTACGGGTTTTGGTGACCAAACTGAGAGATACGCATCGAGCTGAGTCAAACATGTATATGAAGGCAGTGAGGGCCACCCTCATTCTTGTGCCCTTATTGGGCATTCAGTTCGTCATCTTCCCTTGGCGGCCAGAGAACCGCTTGGCAGGAGAGATATATGATTACATcatgcacatattaatgcattaccAGGGATTGCTGGTGGCAACCATATTCTGCTTTTTCAATGGAGAGGTCCAGGGAGCTCTGAAAAGGCAGTGGATGCAGTACAAAGCCCAGTGGGGTCAGCGTCGACGTGAACACTGCTCCATGAGATCCACCTCCTACACCGCCACCTCCATCACCGAGGTGCCCGCCTTCATGTACCATCATGACTGCAACAGTGAACACTTGAATGGTAAACAAACAGAAGACTCCGAGCTAGTGGCCCTCAAGACGGGCGAGACATACGCATGATCATTCGGAGAAAAAGATAATACTGGGAAAAAATGTGATTCAATCAAACCGGAGACTGGAGACTCAGATTGACTGAACCTTCGCAAACTCCCCCATCTCAGACAGCACTTAAGCTTCGACACCAGAACATTCAAAGCCTTGTGCTGGCAAAGCCGTTTCTGTTGAAATGTTTCTCAAGGCTTTGTTTATATTCTGTTCAGCTCTGCTTCTGCGAGTTGAAACGCAAAGgaaccgaaaaaaaaaatagagagatgggatgttttttttttttttttttaaatgtcatactAAAGCTGCTAGTGTCAGGCTCCTCTCACATCCTTTTTGGGCTGGTggccacaaataaaaaaaagttactttgcAAAAAACCAAAGGATGTGTTGATTTGTGGGATGCTGCGTGTTTCTCTAAACCACTGGGAACCGATCCTCCAGAGGACAGGCTACGCTCGTCTGTCTCTGAACAAAGGAAAGTTCTTCTGTGCCTGAATCCTGTTCCTGATGGTGGTGAAATGTCAGAGGAGGTTACGGAGATCTGTCTGACGGTCATTTCGCATttgaaaatagctttttatcTGTCTTGCGAGACTCCTGactgctttattgtttttgcagcTGTACTTTTCTGCCTCGTCTTTGCTGCAAAAGGGGGTGTGGAGAAAAAGATGAACATGGACATGGACAATTTTAGGACTGCTTAAAAGTAAATTCACAAACCTGTGCATAGatatgcacaaaaatgtattctgtaaacaaaaacaaaacaaaaaatatatatttaaaaagct

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
K04576 CALCR; calcitonin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195506 lncRNA downstream 1293 12333451 ~ 12379151 (-) True G132398
TU195460 lncRNA downstream 131021 12248381 ~ 12249423 (-) True G132363
TU195451 lncRNA downstream 199077 12178945 ~ 12181367 (-) True G132355
TU195449 lncRNA downstream 203038 12174563 ~ 12177406 (-) True G132353
XR_006247055.1 lncRNA downstream 209596 12162615 ~ 12170848 (-) True LOC122323784
TU195528 lncRNA upstream 36533 12452284 ~ 12452705 (-) True G132417
TU195541 lncRNA upstream 53169 12468920 ~ 12471830 (-) True G132428
TU195542 lncRNA upstream 67865 12483616 ~ 12484168 (-) True G132429
TU195555 lncRNA upstream 95235 12510986 ~ 12511332 (-) True G132436
TU195557 lncRNA upstream 97366 12513117 ~ 12525593 (-) True G132437
XM_043217882.1 mRNA downstream 181126 12197875 ~ 12199318 (-) True LOC122323778
XM_043217881.1 mRNA downstream 188139 12191038 ~ 12192305 (-) True LOC122323777
XM_043217880.1 mRNA downstream 188193 12191038 ~ 12192251 (-) False LOC122323777
XM_043217875.1 mRNA downstream 189543 12189282 ~ 12190901 (-) True efcab1
XM_043217978.1 mRNA downstream 624006 11709923 ~ 11756438 (-) True LOC122323871
XM_043217873.1 mRNA upstream 5127 12420878 ~ 12423119 (-) True tfpi2
XM_043217886.1 mRNA upstream 20200 12435951 ~ 12438085 (-) False bet1
XM_043218307.1 mRNA upstream 81477 12497228 ~ 12508605 (-) True sgce
XM_043218309.1 mRNA upstream 81477 12497228 ~ 12508604 (-) False sgce
XM_043218312.1 mRNA upstream 81477 12497228 ~ 12508603 (-) False sgce
TU195352 other downstream 547537 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 642962 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1209531 11170270 ~ 11170913 (-) True G132219
TU195128 other downstream 2068516 10307958 ~ 10311928 (-) False elp2
TU195513 other upstream 20028 12435779 ~ 12438071 (-) True bet1
TU195819 other upstream 182023 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 228213 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 251513 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 612066 13027817 ~ 13029349 (-) True cart4

Expression Profile