RNA id: XM_043217863.1


Basic Information

Item Value
RNA id XM_043217863.1
length 2065
RNA type mRNA
GC content 0.51
exon number 12
gene id sfpq
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12121395 ~ 12139784 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTTCTCGCGCATCCAGCGGCCATTTTACAAAGCCAGCCTCGGGAGTGCGAGTTACAAGCTCCTCTGTAGTTACCTTCATTCAATATAGTTCGTTGTTTAACCGTATCCAGTACCCTCGCGATATTTTTTAACGGTTTCCCCCTCCAGTCTACTTGTGTGAAAATGTCTCGTGACCGGTCCCGTAACCGTGGAGGATTTCAGCACCGAGGCCGCGGAGGAATGGGGATGCGCGGCGGCATGGGAAACCCTAACTTTCGGAATCAAAACCAGCATCCTTTTCAAAACCGGGGACCCCACATGGGTGTAGGGTTTAAGCCGAATCAGGGAAACCAACCCAACCAGGTCTCTACGCCACAGAAGCCGCAGGAATCCAATCAGAACAAGCCAGTTGTCCAATCACCTCCGGCGCAAGGCCCTGGTGTGGCCCAGCAGAGCAACAACAAAGGCCCGGCGCCGCAGCAGACCGCCAGCCCCGCTCAGCCGAAGATCCAGTCCCCGCCGCCGCAGAATACTGTAAAGACTCCGGACCTCGGTTCTCCGCAGAACCAGGCCAGAAAGAACCAACCCAAAGGTGCGGTGGGAAATGGCCAAAAGCCGCCTATTACCGTGAAGAAAGACCCAGAGCAGACGCCGCCTCTAACACAGCAACAACCAGGCACAAAGACCGAGCACGTCTCCCAGCCTCAGCAGTTGAAGGCAACGCTGTCTTTGCTGCGCAAGCCCGGGGAGAAAACCTACACTCAACGTTGCCGTCTGTTTATTGGGAACCTACCAAACGACATCACTGAACCTGAATTCAGGAAATTGTTTGCAAAGTATGGGGAGCCCAGTGAGATTTTTATCAATCAAAGCAAAGGTTTTGGATTTATCAGACTGGAATCTCGTGCCTTGGCAGAGATTGCAAAAGCTGAGCTGGATGATACTCCGATGAAAGGCAGACCACTTAGAGTTCGTTTTGCCACTCATTCTGCTGCACTTTCTGTGCGCAACCTGTCTCCGTTTGTGTCCAACGAGTTGCTGGAAGAAGCCTTCTCTCAATTTGGAATGGTGGAAAGGGCTGTAGTTATCGTAGATGACCGTGGTCGCTCAACGGGGAAGGGCATCGTTGAGTTTTCTTCCAAGCCAGCTGCAAGGAAGGCCCTTGATCGGATCAGTGATGGAGTTTTCCTTCTCACATCGGCACCCCGTCCGATTGTGGTAGAATTGTTAGAACAGTATGATGATGAGGATGGATTGCCAGAGAAACTTGCACAGAAGAACCCCAGTTATCAGAAGGAGCGAGAGCAACCTCCTCGGTTCGCCCGTCCTGGCACCTTTGAGTTTGAGTACTCCCAGCGATGGAAGTCTCTTGATGAGATGGAGAAACAGCAGAGACAGCAAGTGGAGAAAAACATTTGCGAGGCCCGTGAGAAGCTAGAAGCAGAAATGGAAGATGCCTATCATGAGCACCAAGCAAACATGCTCAGACAGGacCTCCTTAGACGTCAGGAGGAACTTCGTCGCATGGAAGAGTTGCACAGTCAGGAGATGCAGAAACGTAAAGAGATGCAGCTCAGACAAGAAGAGGAACGCCGTAGGAGAGAGGAGGAAATGATGCGGCAGAGAGAAATTGAAGAACAAATGAGACGCAAACGGGAGGAGTCTTACAGAATGGGAGGCTTTATGGATAATagGGACCGGGAGATGAGAATGAATCCTAGTGGAGGCCTGGGGTTGGCTGatatGCCGTTTGGGTCACCTAACCAGAAATTCCCATTGACAGGAATGAATTTTGAAGGACACCAGGGAATGGGGGGACCAGCACCAGGGGGCATGGTGCCCAACGAAATGGGGCCTCGGGTGATTGAAGGAGGATAAGCGGATTCATACACTTTGAAATCTGGgtcAACTAAGGAACCTGTTCTCTCAGCAGCTGAGCACTATGGGCACCAAATGTTCCTGTACTGTGGAAAATGTGCAgTCTCGTTGGAGTGTGACGTGACATGGCAACTTGGGAAATCTTAAGTGCAGCACTGGATATGGATCATGATTAtatcagattttaaataaacaacataaagaTC

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195383 lncRNA upstream 6042 12114759 ~ 12115354 (+) True G132305
XR_006247061.1 lncRNA upstream 7651 12112991 ~ 12113745 (+) True LOC122323790
TU195382 lncRNA upstream 9399 12111527 ~ 12111997 (+) False LOC122323774
XR_006247060.1 lncRNA upstream 14726 12105788 ~ 12106670 (+) True LOC122323789
XR_006247065.1 lncRNA upstream 17583 12103312 ~ 12103813 (+) True LOC122323793
TU195390 lncRNA downstream 50954 12190738 ~ 12192364 (+) False G132311
TU195392 lncRNA downstream 50954 12190738 ~ 12192364 (+) False G132311
TU195393 lncRNA downstream 50954 12190738 ~ 12192364 (+) False G132311
TU195394 lncRNA downstream 50954 12190738 ~ 12192364 (+) True G132311
TU195378 lncRNA downstream 57893 12197677 ~ 12199695 (+) True G132301
XM_043217884.1 mRNA upstream 1502 12118492 ~ 12119894 (+) True LOC122323779
XM_043217981.1 mRNA upstream 2814 12116530 ~ 12118582 (+) True LOC122323874
XM_043217878.1 mRNA upstream 8499 12111279 ~ 12112897 (+) True LOC122323774
XM_043217980.1 mRNA upstream 10569 12109556 ~ 12110827 (+) True LOC122323873
XM_043217877.1 mRNA upstream 22498 12097091 ~ 12098898 (+) True LOC122323773
XM_043217852.1 mRNA downstream 5969 12145753 ~ 12163878 (+) True LOC122323754
XM_043217851.1 mRNA downstream 25301 12165085 ~ 12184252 (+) False LOC122323753
XM_043217849.1 mRNA downstream 28060 12167844 ~ 12184252 (+) True LOC122323753
XM_043217850.1 mRNA downstream 31799 12171583 ~ 12184252 (+) False LOC122323753
XM_043217866.1 mRNA downstream 46857 12186641 ~ 12190024 (+) True rbm48
TU195256 other upstream 597515 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2192923 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2482435 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 2582903 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 2957324 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1165222 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2647760 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2694853 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 3009520 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3216956 15356740 ~ 15361845 (+) True anxa14

Expression Profile