RNA id: XM_043217869.1



Basic Information


Item Value
RNA id XM_043217869.1
length 1199
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC122323766
representative True

Chromosome Information


Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12068332 ~ 12070856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTGTCTGCAGAGTCAAGCACCTATACCAGCGCTGATGGTACTTCCACAGATCCCTCAGATCTGGAGGCCACCAAAGGGTTCACCTCCTCCAGTTCTGTGGGTGTTTACTCCCCTGAAGAGAGTGAGATGGCTGACCCTCAGGCTGCAGCCATTCTTGAAGATGCAGCTGGTGATCAGACTGTCCCTGAAGACTGCGTCCTCGGAGTGCTAGCCAGTATGACAGCCCGGTCAAACAGTCTGCCCCAGGCTGAAATACTGGAACACACAGAGTGCAGTTCTGAGCGGGAGCAGATTGAGATCGAGGAGCTGCACACGGAGGATGGTGCTCAACTGGCTGATGTTGTAGCAACAGCATCACCAACCAACATCAATCACTTGggTTTTCCCAATTTAGGAAACACTTGCTACATGAACGCCGTGTTGCAGTGCCTCCTCAGCGTTTCCCCCTTCAGAAAGGATATACTTACCCAGAGAGAACGGTGGAACGAGGGAAGCGCAATGCTCAGGGCGCTTAGTGACCTGCATATGACCAGGCTGATGGGCAACgacaaacagctgaaaacaaaGCTCTTGTCCAGTGTGAAGGCCTGCATTGAAACTCGCCATCCAGACTTTTTGGGAGACCATAAACAAGACGCCCATGAGTTCTTGCTGGTTTGCCTGTCTCACCTTAAAGAGGAGGGCGAGTTTCTGCGAAGCTGCTGGCCCACATACACCTGCCCAGTAGCTAACATGGAGTTTCAGCTCAACCGCCTTCTCACCTGCAACAGCTGTGGTTTCCAGAGGAGCTTTACAGAGGATTCCAACTACCTCTCTCTGGTGATCAGTCCTCAAAGAAGCCTCACTCACAGCCTGGAGCAGTACTTCAAAACATCTTCGTTGGACTGCTCATGCAGTGAGTGTGCTGGCGCGACAGCTTCTGAGGCCCTGGAATTAGTTACCTGTCCACGGATCCTGGTGCTTCTGGTGATGCGTTTTGACATAACATCGTCAATGAAGAAGCTGAAAGATAAACTGGAAGTTCCACAAGAGTTTTCACTGTCCTGTAGTACAGGTGGAAGAATCAGACAGCAGGACACTGTATAAACTAGCTGGTGTCGTGTCACATATGGGCAGCAGTTTGTATTGTGGGCACTACATCAGTTATGTCCATGACGGATCTGAATGGCTTAAATGCAGTGACAACTCCATCAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195358 lncRNA upstream 7953 12060037 ~ 12060379 (+) True G132298
TU195351 lncRNA upstream 235424 11832173 ~ 11832908 (+) True G132291
TU195319 lncRNA upstream 358460 11708970 ~ 11709872 (+) True G132269
TU195310 lncRNA upstream 359869 11707521 ~ 11708463 (+) True G132267
TU195309 lncRNA upstream 361083 11707012 ~ 11707249 (+) True G132266
XR_006247067.1 lncRNA downstream 6982 12077838 ~ 12078252 (+) True LOC122323795
XR_006247064.1 lncRNA downstream 14164 12085020 ~ 12085953 (+) True LOC122323792
XR_006247068.1 lncRNA downstream 19229 12090085 ~ 12090548 (+) True LOC122323796
XR_006247059.1 lncRNA downstream 20904 12091760 ~ 12093230 (+) True LOC122323788
XR_006247065.1 lncRNA downstream 32456 12103312 ~ 12103813 (+) True LOC122323793
XM_043217856.1 mRNA upstream 296258 11764874 ~ 11772074 (+) True LOC122323759
XM_043217976.1 mRNA upstream 485395 11535963 ~ 11582937 (+) True LOC122323870
XM_043217887.1 mRNA upstream 545152 11522229 ~ 11523180 (+) False LOC122323782
XM_043217870.1 mRNA upstream 547096 11515528 ~ 11521236 (+) True LOC122323767
XM_043217874.1 mRNA upstream 554441 11511343 ~ 11513891 (+) True LOC122323771
XM_043217885.1 mRNA downstream 5725 12076581 ~ 12077830 (+) True LOC122323780
XM_043217979.1 mRNA downstream 10392 12081248 ~ 12084831 (+) True LOC122323872
XM_043217877.1 mRNA downstream 26235 12097091 ~ 12098898 (+) True LOC122323773
XM_043217980.1 mRNA downstream 38700 12109556 ~ 12110827 (+) True LOC122323873
XM_043217878.1 mRNA downstream 40423 12111279 ~ 12112897 (+) True LOC122323774
TU195256 other upstream 544451 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2139859 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 2429371 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 2529839 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 2904260 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1234150 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 2716688 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 2763781 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 3078448 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3285884 15356740 ~ 15361845 (+) True anxa14

Expression Profile