RNA id: TCONS_00010793


Basic Information

Item Value
RNA id TCONS_00010793
length 2351
lncRNA type sense_over
GC content 0.57
exon number 12
gene id XLOC_005085
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3314504 ~ 3453589 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGAAgagcacacatacatatacactctgTCCCTCCCAGACATGCCGCTCTGCTTGTGTTTTCACCTCCGCGTGTGCATTCGCTCTGTTGGACGCAGGATTATTAATGTGTGATGTGTTGGAGGAATGGCATGCAAGGGAACAgGGGGGATAGGAGCTGAACTCGGGCCCCCGCCGTCAGTGGACGAGGCAGCGAACACGTTGATGACTCGTCTTGGCTTTTTACTGGGAGACAAAGTGAGCGAGGGCTCTGAAGAGCCGCAGTTCAGCATGGAGGAGCCTGATGACGCGCAGGGTTTTGGAGCCAGCGGGAGGATGAGTCCATGTTCCACCCTGACCAGCAGCACCGCGTCCCCTCCAGCCTGCAGCCCGTGCTCCACTCTGCCCTCCGCTGCTCCAGGACAGGCCGTCACCAGCCCCACATCCACCCTGGAGAGCAGAGACAGCGGCATCATCGCCACCCTCACCAATTACTCAGAGCCGATGGACCGCAGTGGGAAACACGGCGACGGCTCTCGGGGAAGCAGCCTGAAGCTTTGGCACTCACACAGATCTACACTGGATTCCAGTCTGTACCGCGTGGATGAGAACATGACCGCCTCCACCTTCAGCCTCAACAAGATCCCTGAGCCAAGCTCCGTCCACTACTCATCTCACCCCACCCCCCTATACCTCATGCCCCGCCCCAACTCAGTGGCAGCCACGAGTTCGGCTCACCTGGAGGACTTGGCGTATTTGGATGAGCAGAGACACGCGCCCCTGCGCACCTCGCTGCGGATGCCCAGACAGAGCTCCACCGCGGGCCGCTCCGGGCAGGACCTGCGAGCTTCCGCTAACAGTCATGCCTGGCAGTCTCAGTCACTGCGCTTGGCTCCGTATCGACTGCAGGACATCGCTCTGAAGCCGCTGCTGTTCGAGGTGCCGAGCATCACCATGGACTCTGTGTTCACGGGCCGCGATTGGCTCTTTCAGGAGATCGACGCTTGTCTGCGCTCCACACACTCGGGCTCCAGCGCCGGCGTGGTTTTGGTGGGAAACATCGGATTTGGGAAAACAGCCATAATCTCACGGCTGGTGGCTCTGAGCTGCCATGGGAATCGCATGAGACAGATCGCCTCCGACAGCCCACAGGCATCGCCAAAACatggaGATGGCATCCCTCTCTCACAGCCTCAGCCTTCCCATGGTACACTGGGTGGAGGAAGCTGTCCGGGAACTCCAGAGATGAGGAGGAGGCAGGAGGAGGCCATGAGGAGACTCGCCGCTCagGTGGTGGCCTATCACTACTGTCAGTCTGATAATGCCTACACTTGCCTGGTGCCGGAGTTTGTGCACAATGTGGCGGCGCTGCTGTGTCGTTCACCACAACTCACCGCATACAGAGAGCTGCTGCTGAAGGAGCCGCACATCCAGAGCATGCTCAGTCTGCGCTCCTGCGTACAAGACCCACCCACAGCCTTCAGGAGAGGAGTGCTGGAACCCCTGCACGCACTTTATAAAGAGAGGAAGATCACTCCAGAAGAAGATCTCATCATTCTCATTGACGGTCTGAATGAGGCCGAGTTCCACAAACCAGACTATGGCGACACCATTGTGTCTTTCCTCTGTAAAACCATCAACAAGTTTCCAGCCTGGCTCAAACTGGTGGTGACAGTCAGAACAACTCTGCAGGAAATCACCAAACCTCTGCCGTTCCACCAAATCTCTTTGGACGCTCTGGAGGAAAACGACGCCATCGATCACGACCTGCAAGGCTACATCCTCCACCGCATCCATAGCAGTGCTGAGATCCAGAACAACATCTCGCTGAATGGCAAGATGGACAACAGCAGCTTCGGCAAGCTCAGCTCCCACCTCAAGGCCCTCAGTCAGGGCTCCTTCCTCTACCTGAAGCTCACCTTCGACCTGATTGAGCGCGGATACCTGGTGCTCAAGAGCTCCAACTACAAGGTGGTCCCGGTCAGTTTGGCGGAGGTCTACCTGCTGCAGTGTAACATGAGGTTCCCCACGCAGTCGTCTTTCGAGAGGGCTCTGCCACTGCTTAATGTGGGCCTGGCTTCATTGCACCCGCTCACCGACGAACAGATCTACCAGGCCATCAATGGTGGCTCCGTCAAGGGGACTCTGGACTGGGACGACTTCCAGCAGAGGATGGAGAACCTGTCTGTGTTCTTGGTGAAGAGGCGGGACGGCACGCGCATGTTCGTTCATCCTTCTTTCAGAGAGTGGCTCATATGGAGAGAGGAAGGAGAGAAGACCAAGTTCCTTTGCGATCCCAGgAATGGCCACACTCTTCTGGCTTTCTGGTTCTCCAGACAAGAAAACAAACTAAACAGGCAGCAGACCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011067 lncRNA downstream 46121 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA downstream 46186 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00009873 lncRNA downstream 461446 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011066 lncRNA downstream 586389 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00011064 lncRNA downstream 661530 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011069 lncRNA upstream 136484 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00011070 lncRNA upstream 187063 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011071 lncRNA upstream 399937 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00009895 lncRNA upstream 422971 3805655 ~ 3806820 (-) True XLOC_005093
TCONS_00011072 lncRNA upstream 477780 3860464 ~ 3865234 (-) True XLOC_005094
TCONS_00009884 mRNA downstream 31881 3287783 ~ 3299149 (-) True XLOC_005084
TCONS_00009883 mRNA downstream 78767 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009882 mRNA downstream 93469 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009881 mRNA downstream 197547 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009879 mRNA downstream 253635 3054442 ~ 3077395 (-) False XLOC_005079
TCONS_00009886 mRNA upstream 269331 3652015 ~ 3705862 (-) False XLOC_005088
TCONS_00009887 mRNA upstream 269537 3652221 ~ 3705862 (-) True XLOC_005088
TCONS_00009888 mRNA upstream 331392 3714076 ~ 3721957 (-) True XLOC_005089
TCONS_00009889 mRNA upstream 357921 3740605 ~ 3756405 (-) False XLOC_005090
TCONS_00009890 mRNA upstream 358064 3740748 ~ 3753131 (-) True XLOC_005090
TCONS_00009859 other downstream 1840442 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2708741 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 903682 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 912865 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 915173 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 915543 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2016996 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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