RNA id: XM_043217875.1


Basic Information

Item Value
RNA id XM_043217875.1
length 1027
RNA type mRNA
GC content 0.45
exon number 6
gene id efcab1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12189282 ~ 12190901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAccaatctgcaaaaaaaaaaggtatcgCTGAACAAATCTGAATGTGATTCAAAAGATTCGAGTCACTGGGAAGAATCAAAACCCAGGCACAGCAACGAGCACTGTAGCCTAGATACTGAGGAAGACAGCTGCCCCACTAAGTCCCACAATAACCAGATACGGTTTAAAATGCTGttagtataaaataaaacgtttactgaaaaaataaaatgaacgaCTCGGGTTCTCTTTCGGACGCCACACAATGCTCCGCCTCCGTGACGCGTTTCTATAGCAACATTTAACGAAAGGCTCGCgcgagtgaaaaaaaaaacatgcagaaaatGTCGGCGATGAACagaaaactaattcaaaacCTCGCCGAAACATTATGCAAGCAAGTCAAACACTTTAATAAAGCGGAGACGGAGTGTCTGATAAGGCTGTTCAACGGTCTGCTGGGAGAGCAGGCAGAGAGAAGAGCGCCTCACGGACTGGACCGGGTCAGGTTTAGAAATATACTGCACAACACGTTCGGCATGACCGACGATATGATGATGGACAGCGtATTTCGTGCGTTTGACAAAGACAATGACACCTACATAAGTGCCAAAGAGTGGGTGGAAGGCCTGTCCGTGTTTCTGCGAGGCACCCTGGAcgagaaaattaaatTCTGTTTCGACGTCTACAACCTGCATGGGGACGGATACATCTCACGGGAGGAGATGCTACAAATGCTCAAAGACAGCCTCGTCAGGCAACCCACCGAAGATGATCCCGACGAAGGAATTAAGGACATTGTGGAGATCGCCTTGAAAAAAATGgattatgaCCACGATGGGAAAGTTTCTTATTCAGATTTTGAGAAGACGGTCAAAGATGAAAACCTTTTACTGGAAGCCTTCGGCAACTGCCTCCCAGACACAAAGAGCGTACTGGCCTTCGAGCAATACGCCTTTCAGGAACCACACGGACATTAAAAAGAACCGCTTCATTTTTTGAAACAGTATTTGTggctgaaactgaaataaatgtgtaaaatgtt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195422 lncRNA downstream 7139 12159701 ~ 12182143 (-) True G132329
TU195451 lncRNA downstream 7915 12178945 ~ 12181367 (-) True G132355
TU195449 lncRNA downstream 11876 12174563 ~ 12177406 (-) True G132353
XR_006247055.1 lncRNA downstream 18434 12162615 ~ 12170848 (-) True LOC122323784
TU195432 lncRNA downstream 65287 12123604 ~ 12123995 (-) True G132336
TU195460 lncRNA upstream 57480 12248381 ~ 12249423 (-) True G132363
TU195506 lncRNA upstream 142550 12333451 ~ 12379151 (-) True G132398
TU195528 lncRNA upstream 261383 12452284 ~ 12452705 (-) True G132417
TU195541 lncRNA upstream 278019 12468920 ~ 12471830 (-) True G132428
TU195542 lncRNA upstream 292715 12483616 ~ 12484168 (-) True G132429
XM_043217978.1 mRNA downstream 432844 11709923 ~ 11756438 (-) True LOC122323871
XM_043217879.1 mRNA downstream 603211 11584050 ~ 11586071 (-) True LOC122323775
XM_043217975.1 mRNA downstream 692669 11490127 ~ 11496613 (-) True LOC122323869
XM_043218014.1 mRNA downstream 1071001 10876437 ~ 11118281 (-) True csmd2
XM_043217089.1 mRNA downstream 1444153 10740374 ~ 10745129 (-) True trappc3
XM_043217881.1 mRNA upstream 137 12191038 ~ 12192305 (-) True LOC122323777
XM_043217880.1 mRNA upstream 137 12191038 ~ 12192251 (-) False LOC122323777
XM_043217882.1 mRNA upstream 6974 12197875 ~ 12199318 (-) True LOC122323778
XM_043217858.1 mRNA upstream 189543 12380444 ~ 12415751 (-) False calcr
XM_043217859.1 mRNA upstream 189543 12380444 ~ 12415751 (-) True calcr
TU195352 other downstream 356375 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 451800 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1018369 11170270 ~ 11170913 (-) True G132219
TU195128 other downstream 1877354 10307958 ~ 10311928 (-) False elp2
TU195129 other downstream 1878607 10307958 ~ 10310675 (-) False elp2
TU195513 other upstream 244878 12435779 ~ 12438071 (-) True bet1
TU195819 other upstream 406873 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 453063 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 476363 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 836916 13027817 ~ 13029349 (-) True cart4

Expression Profile