RNA id: XM_043217879.1


Basic Information

Item Value
RNA id XM_043217879.1
length 1024
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC122323775
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11584050 ~ 11586071 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actTGATTTGTCTTCCGGCGTCAAACATCACTGTTTATATGTGATCAGATTATCAGCCTctccaaaaaaattaattgctgtGGTGGATGCCGACATGGAAGATAGTGAAAAGAAAGCCCCATCAGTAATCGATCGTTATTTCACCCGCTGGTATAAAACTGATCTGAAAGGAAAAGCATGTGAGGATCACTGCATTCTACAGCACTCCAACAGGATATGCGTCATCACACTCGCAGAGTCTCATCCTATCCTTCAGAATGGACggaaaatcaaaaatataaactacCAGATCAGCGATGGATGCAGTCGTCTGAAGAACAAGGTGTCTGGAAAGTCAAAGCGAGGCGGTCAGTTCCTGACAGAGTTTGCGCCACTGTGTAGAATAACATGTACAGATGAACAGGAATACACCATATTCAGCTGTATCAGAGGACGTCTTCTAGAAGTAAATGAAGCCATATTGAACAAGCTAGACCTGTTATCGGAAAAGCCTTCCACAGAGGGATACATTGCCGTTATACTACCCAAATTTGAAGAGAGTAAGAGTATCACTGAAGGCCTTCTGACCAGAGAACAATATGAGGAGGTTCTGACTAAAAGAAACCAACAAGAAGAGCCTTGCTGAGATCAACTTGCGCTTTGGAGCTGCCGAATGACTGCCGAGTCTGCTTTAAGGAATAATTACTTCAAGCTGGTAGAAACATGAGTGGCAGCATGAATGTGTGCCActcacacattaaaaaaaaaaaaaaaaaaaaaaacatcttgaggAAATTTTGAAGGAATGAAGACTTGTCTGCTGGATCCAGAGGAGTCTTGGATTTGACTGGAGTGCATTTTGTTGGACCACTAGTATAACAATGCCagtgttatgtttttttgagtgtgtttaTTGTTTCATTAAGAAGTTTCCTAATTTGAGAAGTAAAAGATCTGTGTCCTCgcagaaacattattttccgTCTGGTTGCTATAAAACTGCTTATAGCCCTGATGCTAAATAAAGGAACTCGTCCCTTCTGAG

Function

GO:

id name namespace
GO:0006546 glycine catabolic process biological_process
GO:0005960 glycine cleavage complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195265 lncRNA downstream 18420 11508717 ~ 11565630 (-) True G132241
TU195271 lncRNA downstream 64771 11517185 ~ 11519279 (-) True G132245
XR_006247063.1 lncRNA downstream 68592 11513131 ~ 11515458 (-) False LOC122323791
XR_006247062.1 lncRNA downstream 69745 11513131 ~ 11514305 (-) True LOC122323791
TU195251 lncRNA downstream 96061 11484803 ~ 11487989 (-) True G132231
XR_006247058.1 lncRNA upstream 119015 11705086 ~ 11706272 (-) True LOC122323787
TU195337 lncRNA upstream 122853 11708924 ~ 11709875 (-) True G132281
TU195336 lncRNA upstream 122905 11708976 ~ 11709875 (-) False G132281
TU195340 lncRNA upstream 141692 11727763 ~ 11785289 (-) True G132283
TU195350 lncRNA upstream 244276 11830347 ~ 11830796 (-) True G132290
XM_043217975.1 mRNA downstream 87437 11490127 ~ 11496613 (-) True LOC122323869
XM_043218014.1 mRNA downstream 465769 10876437 ~ 11118281 (-) True csmd2
XM_043217089.1 mRNA downstream 838921 10740374 ~ 10745129 (-) True trappc3
XM_043217356.1 mRNA downstream 856043 10637428 ~ 10728007 (-) False col8a2
XM_043217978.1 mRNA upstream 123852 11709923 ~ 11756438 (-) True LOC122323871
XM_043217875.1 mRNA upstream 603211 12189282 ~ 12190901 (-) True efcab1
XM_043217881.1 mRNA upstream 604967 12191038 ~ 12192305 (-) True LOC122323777
XM_043217880.1 mRNA upstream 604967 12191038 ~ 12192251 (-) False LOC122323777
XM_043217882.1 mRNA upstream 611804 12197875 ~ 12199318 (-) True LOC122323778
TU195233 other downstream 413137 11170270 ~ 11170913 (-) True G132219
TU195128 other downstream 1272122 10307958 ~ 10311928 (-) False elp2
TU195129 other downstream 1273375 10307958 ~ 10310675 (-) False elp2
XR_006246990.1 other downstream 1919591 9659895 ~ 9664459 (-) True cibar1
TU194713 other downstream 2274698 9308720 ~ 9309352 (-) True G131861
TU195332 other upstream 140252 11726323 ~ 11737482 (-) False LOC122323871
TU195352 other upstream 246102 11832173 ~ 11832907 (-) True G132292
TU195513 other upstream 849708 12435779 ~ 12438071 (-) True bet1
TU195819 other upstream 1011703 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 1057893 12643964 ~ 12669196 (-) False sem1

Expression Profile