RNA id: XM_043217894.1


Basic Information

Item Value
RNA id XM_043217894.1
length 3545
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC122323800
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 959443 ~ 993648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCGTCTGGTACTTTTCCATCAGGGGACAGTCAGACGCAGTGGTCTCTATGCTCAAATACCTGCTCAGGGAAGAACTCGGAGGGCAAGCAGACCAGATCACGCCTCCATTCTGGCCCTACAACGCTGGGGAAGGTAGGTTTTTGGTGCCCCAACAGCAGCGCCTTGCAGGAGGTCCGCAACTGCAATGATCATCCCTGCACCGTGTACCACTGGCAGACGGGACCCTGGGGTCAGTGCATAGAGGACGCGTCCATTCCGTCTGCCAACAGCTAAGCTGAGCCGACTGGAGCAGGAGTCGGCACTAATGATGCGCTCTGCTCCACCGGAATGCAGACGCGCAAAAATCATTTGTGTCCGGTCAATGCTGGAGCCAGGTGCCACCGAAAAaaGTGTCCAGAGAGTCTGCGTCCAGAGACTGTTAGGCCGTGTCTTCTGCCCTGCAAGAGAGACTGCATTGTCACTCCTTACAGTGATTGGACGCCCTGTCCTTCCTCCTGCCAAACAGGTGGTCCTGTCAAAAAGAAACAATCAAGGAAACGCATTATCATACAGCTTCCAGCTAACGGGGGCCAAGACTGTCCAGAAGTGCTCTTCCAGGAGAAGGAATGTGATGCTGGATCTGTTTGTCCAGGCTACAGGTGGAAAACCCACAAGTGGCGCAGGTGTCAGTTGGTTCCCTGGACCATTCGTCAGGAGAGTCCTGGAGCACAAGAGACCTGTGGACCAGGACTACAGGCTAGAGCCGTATCGTGTAAAAAGCTGGATGGTGGACCTGCAGACGTTGCTGCCTGTCTTAAGTTGGCGGGTCCTATGCCTCAACTCACTCAGTCCTGTCAGCTTCCATGCCAGGATGACTGCCAGCTGACCACCTGGTCCAAATTCTCATCCTGCGCTGCTGATTGTGTGGGTGTCCGAACTAGGAAAAGAACTCTTGTTGgtaaaagcaaaaagagagaacagtgtaaaaacacacagatgtatCCTCTGAGCGAAACCCAGTACTGCCCCTGCAACAAGTACAATGCCCAGCCCGTGGGGAACTGGTCTGACTGCATCCTGCCCGAGGGCGGGCGAGTAGAGGGCCTTTTGGGTATGAAAGTGCAAGGTGATATCAAGGAGTGTGGCCAGGGTTGGTTTCAAGCCATGGTGTGCTATGACCAGGACAGCCGCCTCGTGGGAGCGTCACGCTGCAACAGTCACGGTTATATAGAGGAAGCGTGTATCATCCCGTGTCCGTCTGACTGTAAGCTCAGCGAATGGTCAAATTGGTCCCGTTGCAGTAAGTCCTGTGGCAGTGGAGTCAAAGTGCGGTCCAAGTGGCTTCGAGAGAAACCTTATAACGGTGGCAGGCCCTGCCCCAAACTGGACCATGTCAATCAGGCTCAGGTGTATGAAGTGGTACCATGTCTGAGCGACTGCAGTCAGTATGTCTGGGTGGCTGAGCCGTGGAGCGTCTGGAAGGTCAGTAATGTTGACCTGAAGGAGAACTGTGGAGAAGGTGTACAGACGAGGAAAGTCAGGTGCATGCAGAACACTGTCGATGGACCTTCAGACCCTGTAGAAGACTATCTCTGTGATCCAGAGGAGATGCCGCTTGGAGCCAGAGAGAGCAAGTTGCCCTGTCCTGGGGACTGCGTTTTGACTGACTGGGGCCCTTGGAGTCGATGCCAATTGCCATGCAATGTGAATAGTACAAGGCAGAAGACCGCCAGCCCTATACGTCAGCCTGGGGATGAGAAACAGTGTCCTTCAACTACAGAGAAAGAAACGTGCACCTTGAACACCAACTGCTTCCATTACTCCTATAATATCACAGACTGGAGCACATGTCAGCTGAGTGAACGGGCCGTATGCGGGGTTGGATTCAAGACACGCATGCTCGACTGCGTTCGCAGTGATGGCAAGTCTGTGGACCTCAAGTTTTGCGAGGAGCTCGGTCTCGAGAAAAAATGGCAGATGAACGCTTCCTGTGTGGTCGAGTGCCCTGTCAACTGCCAGCTGTCTGATTGGTCGTCCTGGTCTGAATGCTCTCACACCTGCGGTCTAGCTGGGAAGCTCTGGAGAAGGAGAATCGTGATCCAGGCCTCTCAGGGAGACGGACGCCCGTGTTCCTCACAGCTGGAACAGTGGAAGCCCTGTCCTGTTAAACCCTGCTACAGCTGGAGGTACAGCGCCTGGTCTCCATGCAAATCTGAGGGTGCTCGGTGTGGAGAGGGCCTGCGCTTCAGGAACGTGTCCTGCTTTGTGTCTGATGGCTCGGGGAAGGATCCGGGCAGTATGGTGGATGAGGAACTGTGTGGAGACCTGGAGCAGACAGTGGATGGGGAAAAACAGATCATCCTGCAGGAGTCCTGCACTGTGCCCTGCCCAGGTGAGTGTTACCTGACAGACTGGACTGTGTGGAGCCCTTGTCAGCTGAGCTGTATCAGCGGAGACGATCTGGGCTTCGGTTCGGTGCAGGTGCGTTCTCGTGCCGTTCTAGCTCAGGAACCTGAGAACCTTCTCCAGTGTCCAGAACAGGAATGGGAAGCCAGGCCATGTACAGagGGTCAGTGTTATGAGTACAAATGGAAGACCGGTCCATGGAAAGGCTCATCTCgacaagtctggtgccagcgcTCTGATGGATTAAATGTCACAGGTGGATGCCCGTTGACAAGCGAGCCGGTGTCTGACAGATCATGTGACCCAGTCTGCGACAAACCTCGCTCCTACTGCACCGAGGCTGGGGTGTGCGGCTGCGAGGAGGGTTACACTGAGGTGATGACTTCCGATGGAGTGCTGGATCAGTGCACGCTCATCCCGGTGCTTGAGATCCCCACCGCAGGAGACAGCAAGGCCGACGTGAAGACGATCCGAGCCCTCAACCCCACTCAGCCCACCGCCAACCTACCAGGCCGCTCCGGTCGCACCTGGTTCCTCCAGCCCTTCGGACCCGATGGCAAACTGAAGACCTGGGTGTACGGCGTGGCAGCTGGAGCTTTTGTACTGCTAGTGTTCATTGTCTCTATGACTTACTTAGCCTGCAAAAAGCCAAAGAAGCCCCAGAGAAGACAGATGAACAACAGACTCAAGCCTCTGACGCTGGCTTACGACGGCGACGCTGACATGTAGCCTAACCACGTTCGCTTCGTACTACAAATACTCGCCTCCTTTCACAGTCGGCCATCGGTACAAGCCTCAAACAAGGAGACTCACGCAAACTCACCGACTGCTTTTTATATAAGACGCTACCGGAACCTCAGAGAGAGACTCGATCCGTGTTTATATAACGTTACTCCCCCCCCCCCTTCCTTTTTTTACGTTCAagttttttgactttatttcacGAGAGCCTTCATAAACTCTTCAGAAATCTTCTTCAGGGAGTCTGCCTTCACCTCTCTGCCATTGACATCTTTCTGTAACATAGACTTCAGTCTTTTCGGGAGGAAAGTTGCAGGACCTTTCTGAAATTGggacttttttttggttttgttttttttgctgagaAAGCACAAAATATGCCCGTCTCTTTCTGTCTAGCCGCGCTTCTTGTCAGC

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0043534 blood vessel endothelial cell migration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247109.1 lncRNA downstream 64545 863289 ~ 894898 (-) True LOC122324168
TU191441 lncRNA downstream 237132 719320 ~ 722311 (-) True G129635
TU191421 lncRNA downstream 421640 521875 ~ 537803 (-) True G129618
TU191502 lncRNA upstream 57860 1051508 ~ 1052061 (-) False thsd7aa
TU191556 lncRNA upstream 262897 1256545 ~ 1258314 (-) True G129714
TU191559 lncRNA upstream 278576 1272224 ~ 1272429 (-) True G129717
TU191579 lncRNA upstream 298983 1292631 ~ 1293279 (-) True G129728
TU191582 lncRNA upstream 318538 1312186 ~ 1313269 (-) True G129731
XM_043218235.1 mRNA downstream 3655 922886 ~ 955788 (-) False nxph1
XM_043218236.1 mRNA downstream 9143 922886 ~ 950300 (-) True nxph1
XM_043217030.1 mRNA downstream 148561 737022 ~ 810882 (-) False phf14
XM_043217031.1 mRNA downstream 148561 768439 ~ 810882 (-) False phf14
XM_043217032.1 mRNA downstream 148561 771399 ~ 810882 (-) True phf14
XM_043217895.1 mRNA upstream 23507 1017155 ~ 1052124 (-) True thsd7aa
XM_043216996.1 mRNA upstream 78503 1072151 ~ 1094903 (-) False LOC122323272
XM_043217896.1 mRNA upstream 101342 1094990 ~ 1112229 (-) True LOC122323802
XM_043218161.1 mRNA upstream 123323 1116971 ~ 1248823 (-) True dlgap3
XM_043218162.1 mRNA upstream 123323 1116971 ~ 1248804 (-) False dlgap3
XR_006246987.1 other upstream 78503 1072151 ~ 1094903 (-) False LOC122323272
XR_006246986.1 other upstream 78503 1072151 ~ 1094903 (-) True LOC122323272
TU191551 other upstream 285264 1278912 ~ 1280462 (-) False smim12
TU191574 other upstream 290239 1283887 ~ 1286640 (-) False pef1
TU191589 other upstream 505040 1498688 ~ 1499406 (-) True G129738

Expression Profile