RNA id: XM_043217900.1


Basic Information

Item Value
RNA id XM_043217900.1
length 4253
RNA type mRNA
GC content 0.43
exon number 10
gene id si:dkeyp-120h9.1
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8727259 ~ 8738786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCTCGATATTTTACACGCCAGCCGACCCCGACCCCCCTCCGACGGGTGTAGCCTAGCAGGGCGAGGGCTGCAGCGGACGCGTGTTCCCGCTAACACCACGTTAGCTAACAACCGTGGATGCGAGCGGGGTCGAGGTGTTTTCTCATCTCTCTATCCGACTGAGGATAACTTACCCTCAGCTTTTGAGCTCGCGCGGGGTTTGTGGAGCTCGACCGGTGGTCGTGAGATCGCACCTTCCAGGTTTGAAGCGGAAAGATGAGAATCGGCTGAAAGTCCAGGCTTGAGGTGTGTTTGGTCTGATTCCTGATTCTTGAGTTTTGGTGATACCCCTACCTCTCGAGTTGAGCTCATCATGGGGGACGCCGACTCTACCGGCTCCATGCGTCTAAAGCAGGAGATCTCACTGCTGCACGGCGTCTGTCTCATCGTGGGGAACATGATTGGCTCGGGCATCTTTGTTTCTCCCATCGGCGTCCTTGAGAAAACAGGATCTTACGGTCTGTCTCTGGTGGTTTGGGTCATTGGAGGAATCTTCTCTGTTTTTGGCGCCCTGTGCTATGCCGAGCTGGGCACAACCATTCGTAAGTCGGGAGCTAGTTATGCCTACATCCTGGAGACCTTTGGGGGCTTCCTCGCATTCATCCGTCTGTGGACGTCGCTGATGATCGTGGAACCGGCCTGCCAGGCAGTCATTGCTCTTACTTTTGCTAATTACCTAGTGAAACCGTTCTTCCCCAGCTGCCCGGCACCATACGATGCAGTGCGGCTCATTGCGGCTCTCATTATAGGTCTTCTCACGTTTGTGAACTGCATGAAGGTCAAATGGGGGGCCATTCTTCAGGTCATCTCTACTGTGGCTAAAGTCCTGGCTCTTATAGTCATAATCATTGCCGGAATGATTGTGCTGGCCCAAGGAAAAACAGACAACTTTAGGGATTCGTTTGAGAACTCCAAACTGGATCCAGGAAACATGGCTCTGGCTCTGTACGCTGCTCTGTACTCATACTCCGGCTGGGACACCCTGAACTTCATCACAGAGGAGATCAAAAACCCAGAGAGGAACCTGCCGTTGTCTATAGCGATCTCCATGCCTATTGTCACAGTAATCTACATCCTGACTAATATCGCCTATTATGCAGTGCTGGACATGAATACACTGCTGCAGAGTGAAGCTGTGGCTGtgACGTTTGCTGACCATGTCCTGGGATATGCTAGTTGGCTCATCCCGCTGTCTGTGGCTATCTCCTGTTACGGAGGCCTAAACTCATCTATCATTGCTGCCTCCAGgcTTTTCTTCGTGGGTTCGCGCGAGGGCCATCTACCGAATGTTCTCTGTATGATCCATGTCAGACGCTACACACCAATTCCAGCCCTGCTGTTTAATGGTGGCATGTCACTCATATTTCTCTGCGTGCAAGACGTGTTCCAGCTAATTAATTACTTCAGTTTTAATTACTGGCTGTTCATCGGACTTTCTATAGGCAGTCAGATCTACCTGCGCTTTAAAGCGCCTGACCTGCACCGTCCTGTTAAGTTGAGTCTGTTCTTCCCTATAGTGTACTGCCTGTGCAGTGTGTTTCTGGTGGTTGTACCTCTCTACAGCGACACTATAAACTCTCTGGTGGGAATCATCGTCGCTCTCTCCGGGGCTCCTGTGTATTACATCTGCGTGCACCTCCCGCCCAGCTCCAGACCCGCCTTTCTGGGACACATGCTTGGTACAGTTTGCCTTCTAGGGGTTTTGTTCCACGAATGCGCAATTGTGGTGATGTGTAAAGAATTTCAGCCCAAGATGAATTCGCTGTTATGGAATGGGAGTATTGTGAGCGTATAATGATCTGCATATGGATGCAAATTGCTTTACTGCGAACAATGCCTTCGCTGTTTTCATCCGTCTGAGACTCCCTGAGATAAGCTTCCATGAATATGTCACACGTGAGTATGTAACAGAGGGGaaaaagatgacatttttaGTGGATTTTTGATCATACTccacatttcagcatttatagtGCAGTTGTATTGAGTAATAAAGCTCGGCTAATGTGTTTAATACAGACTATAAGGGAAAAATGTTACAGAAACTGGGTTTTTTGGTCTTAACCTTGTAAACAACTACCTAGCAGAACACATTAGCAACTATACAACAGTATCATGGCCACTGCTTAGAaccatacatataaatatgtagtTGCCTTATTTGAGACTGGTTCTATGGGACTGTTTGTACCCCATTTTTGGAGCGGTCTGTAAACATTGAGTGCTTTGACCTTGTCTGCAACAGCAAGTTAtacgtgtgtgttttaaatactCGTTGATAATTATGGTGAATGAAGTCAAGTTGATCGTTCCAAGATACTGTATTCTgtactgatgaaaaaaaacaaaaaacgtacaatgtacttattgtgttcatattgcattgtaaaacacttctgctgctattgtggtgggatacgggtaaggttaggaaCGGGTCTGGCTAAACCGAATTGATTAAATTGATAGCTCTAATCATTATGTATGTAATGGACATTTGCTGTGGAATGTCACTATGCTTTTAGTTTGAATTAGAATCAtctttataaacacacagcCTTTTAGAGCAGGCTAATTAATCGATACCATTTTGATCTTTGACGTATGGACCAGTTAAGATGTAATATTCTGAAAGATACtcatccttttatttatttatttatttttttccagacaCAGTTTCATTGCAAACACAGAAGCTGTGTTACTGCTGCGTGGCAGATCCCGGTTTGGACCTGGACAATCCGCCTGAGGATcacaaaaaagaataaacacCGGCTCTAAAGCGAGCTAAACCAAAGAAGCCGGATTACCCAGACTTCTTTGAGAATAAGCCAAAACTCAAGCCAGAACAGCACGTCTGCACCTTTCCGGTCCTGAGCGTGCATGGAATGGAGCAATGGATAAAGATGGAGATTAGGATTGAAATATTCAGCCGAGTAAacaactgaacacacacaccctgtGCCTCTGATCCCTCAGACCTCTGACTGTGTTTTGAACATTAGTGGACCATTCAGTTAAAGACTGTTGTAAACGTGAtggtaatttgttttttttcaggcaaGGTTACCTcgttttattcataaatgcttattttatttgtccTTCTGTGACCTTCTGCTGTTCATGACCACAGATGACCAACTTTTGTTAGGCCTGTTAGCTGAAATGAGATCCATTTTTGCTGGATAATGAATTTTGTTTACGGAGATGAAGGATTGTTCCATAGGTACTGCAGACTTGAAAGccatctttttctctcttttgtagTTACAACAACAGTTGGGAAACTGACTTTCTCCAAAGTTACTCCGCGAGCCTTATTTCAGCGTTTTGTAAGCGTCTTTCTTTTATGTAGTGTGTCCTTTTAAAGTCCAAAGTACAGCATGTATTTGGTCATCATGAATAACGTCTTTTTACACTGTCAGTATGTGTGGAAGTGCGTTTGCCATGCGTGGACAGTGATAAAACGGCCGAATTTGACTTTACGAGAGGGGCGACAATCACAGGTTTTtccaaataattgttttatatgcTTGTTGACACGCACAGACATCACTTTAAAAACCGCCGATCGGATGTgaccttttttttcaggatttctGATAAGTCCATCAGATGAGGAATTTTAATAATAGTGGACCAAAGAAACGTTAAACTAATACCAACAATTACGAAGCCTTAATACGTTCATTGCAGTAGAGCTTTAATGTCATAAAGCTGCTGAATAACGGTACGTCTTGCCATTGCTCTTGTATTCTGTAGTGCAGCACTTGATTCCATGCACAGGTCATCCTTCTGTCCAATGCGGTGACCCACGTCATGTCCAAATATAAAGCCATCCAAAATATATTCCACactgaaattattaatttcGTATACGTTTTACCAAACTGTTGTGCAGGTGGTTGCGTGAGTCACCAAAcagaattgtttaaatgttgatCATCtgataaatattgcatttgttttttttcttgtcataaGTACTGTATGGTTGATATTATACGTGCCTTAAAGCAGTTGTGATTTTATATGACCAGATGATCAATATTCTATAGTCTTTTGAGAGTTAGTTATAAATCTATGCTCTTCTATTACATTccattatgttttatgtaagGCTGTGTAACTGTTTGttggtttcttttatttattccataGATGATAAATTGCAGACACTATGACAATAAACACAGGACAAAAAGA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194432 lncRNA downstream 68245 8658159 ~ 8659014 (-) False tdp2b
TU194433 lncRNA downstream 87602 8639428 ~ 8639657 (-) True G131675
TU194405 lncRNA downstream 171667 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA downstream 171667 8551961 ~ 8555592 (-) True G131654
TU194226 lncRNA downstream 372142 8353533 ~ 8355117 (-) True G131511
TU194439 lncRNA upstream 10726 8749025 ~ 8775727 (-) True hey1
TU194471 lncRNA upstream 181741 8920040 ~ 8920695 (-) True G131697
TU194658 lncRNA upstream 301649 9039948 ~ 9048451 (-) True G131820
TU194665 lncRNA upstream 342551 9080850 ~ 9081105 (-) True G131827
TU194681 lncRNA upstream 403554 9141853 ~ 9217661 (-) True G131838
XM_043217959.1 mRNA downstream 942 8672131 ~ 8726317 (-) True ripor2
XM_043217958.1 mRNA downstream 13789 8672131 ~ 8713470 (-) False ripor2
XM_043217962.1 mRNA downstream 14203 8672131 ~ 8713056 (-) False ripor2
XM_043217960.1 mRNA downstream 21313 8672131 ~ 8705946 (-) False ripor2
XM_043217954.1 mRNA downstream 56160 8668062 ~ 8671099 (-) True LOC122323849
XM_043218166.1 mRNA upstream 15899 8754198 ~ 8757673 (-) False hey1
XM_043218138.1 mRNA upstream 49914 8788213 ~ 8805478 (-) True zbtb10
XM_043218428.1 mRNA upstream 85459 8823758 ~ 8870740 (-) True znf704
XM_043218427.1 mRNA upstream 85459 8823758 ~ 8870740 (-) False znf704
XM_043218429.1 mRNA upstream 93646 8831945 ~ 8870739 (-) False znf704
XR_006247071.1 other downstream 406358 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 406374 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 597989 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 598001 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 1122116 7602133 ~ 7605143 (-) True G131373
XR_006247085.1 other upstream 13070 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 570421 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 921596 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1569659 10307958 ~ 10311928 (-) False elp2
TU195129 other upstream 1569659 10307958 ~ 10310675 (-) False elp2

Expression Profile