RNA id: XM_043217904.1


Basic Information

Item Value
RNA id XM_043217904.1
length 2578
RNA type mRNA
GC content 0.49
exon number 15
gene id pals2b
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15902791 ~ 15919610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCCGAAAGGCGGGGCTTAGCGTTTGATTGGCATTGTGTGTGTCCGAATAGTTAGCCACGGGACCCAAGAATACTGAACGCTTTGAATATCTGACCGGGACGACTGGGGAGGACTCGGGACAAATACaTTCTGCACTTGGCTGGAGCAGTGGATGAGAAGTGTGTAGCAGATCGGGGAGGGAGCGGGAACAGCGTCGGCCACAACTGGAGTCTCACTGATCGGCAGCCATGATCACAGGCGAAACGTTCTCAAACGGAGCAGGTTCTGACTCGGATGCCGGGGGCATTGGAGAAACTGGGGAGGGGGCGCCTGAACTTGTTGAAAGTGAAAACACTTCTGGAGCTATGCAGCAGGTGTTGGATAACCTGGGCGAGTTGCCCGCCACCACCGGGGCTAAAGACATTGACCTCATCTTCCTCAAAGGCATCATGGAGAGTCCAATCGTCCGCTCACTGGCCAAGGCTCATGAGCGTTTGGAGGATGTGAAGTTGGAAGCAGTGCAGGAGAATAACGTGGAGCTTGTGACTGAGATCCTGGGTGACATCAGCGGGCTGAGCGTACGAGATGACAGCGCAGCAGAGCTCTCCAAAATCCTGCAGGAGCCCCATTTTCAGTCTCTTCTGGAAGCCCATGACATTGTGGCGTCTAAGTGCTATGAAGCCCCACCCCCTCCTGAAGTGACCAATGATGCAGCAGTAAATAATGCTCTTATGCAGGCCGATGCCGTCAGGATGATTGGCATCCGCAAGAAAGCAGGAGAACCtttgGGTGTGACCTTTCGAATGGACAAGGGTGACCTGGTAATCGCTCGCATCCTCCACGGAGGGCTGATTGACAGGCAGGGGCTGCTGCATGTGGGTGACATTATAAAGGAGGTGAATGGGAAGGACGTCGGTAATAATCCCACTGAACTCCAGGAGATGCTCAAAGAATGTAGTGGAGGAATAACACTGAAAATACTGCCCAGCTACAGAGATGCTGCAGCGCCACCACAgGTTTATGTGCAGCCACATTTTGACTACAATCCCGCCAATGACAATCTAATTCCATGCAGAGAGGCGGGGCTTGCTTTTAAAAGGGGAGATGTCCTGCAGATTGTCAACCGAGAAGACCCAAACTGGTGGCAGGCATGCCATTTAATAGAAGGAGGTACTGGGCTGATTCCCAGTCAGTTTCTGGAGGAAAAGAGGAAAGCATTTGTTCCTAGGGACCTGGATGGAACAGggatCCTTTGTGGTACAATAACCggtaaaaaaaaggaaaaaatgatgTACCTTACTGCCAAAAATGCAgAGTTTGATCGGCATGAGCTTCAGATCTACGAGGAAGTGGCACGTATGCCACCGTTTCAGAGGAAAACGCTCATCCTGATTGGAGCGCAAGGAGTGGGGCGCCGTAGCCTGAAAAACAGACTAGTTGTGCTACATCCCACTCGCTTTGGTACCACTGTACCACACACGTCTCGGCGGCCTCGCAATGACGAGCTAGATGGTCAGTCGTATAGATTTGTAACCCGTCTAGAGATGGAGATGGACATCAAGGCGGGACGGTACCTGGAACATGGAGAGTACGATGGGAACCTCTACGGTACTAAAATTGACTCCATCCATGAGGTGGTGAACACCGGCCGCACGTGTATCCTAGACGTCAATCCCCAGGCTCTGAAGGTGTTAAAAACTGCAGAGTTCATGCCCTATGTCGTGTTCATCGCAGCGCCAGAGTTTGACACACTGAAGTCTATGCACAAAGCTGTGGTTGATGCTGGACTCACCACCAAACAGCTCACAGATGTGGACCTGAAGAAAACCGTGGATGAAAGCGCTCGCATCCTTCGGGCTTACAGACACTACTTTGACCTCATCATTGTCAATGACAACCTAGACGGCGCGTTTGAGAAACTGCAGTCGGCTGTGGACCAACTCTGTACTGAACCACAGTGGGTTCCAGTGAGCTGGGTTTACTAAGGGCATCTTTAAAAGATCACCATACtagtgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattggcaTGTGAGGGGATTGATGCGGGGCAGTGAAGTCACGTGTTTGGACTGACCAACCAAATGAACGTCATCTGCCACGAAAAGCACCGTTAGCCCCAGCCTCACTACTGTGCAAACAATGCAAGGTTTTTCTACTCAAACTGAAAGGGAAgagtacttatttattttagtatttgtatgcttttaaagaaaatctttCTATTTGTAACATCTTCGGAGTTGGGAGAAAAGAAAAGCGAGGAAAACTGAAACCGGCCTTGCCAAAAGAGGGGccgttttttaatttattattgtagttgtttttaCATGCGTTTCTCCTTTTTAATTTTGCAGTACCTGAACCTACTGTGACGTTTTGATTTATACTCAAATGAAGGATTAACCTGACAGAGTGTAGCAGGCCAAGGGCTCCTGTAGAACATTCTAGATCCTAAAACCATGAACCACAAAACTGTTTACATAGACCCTGTTCTCCTGTCATTTGCTTTTCTTCATATCcgaaagagatgcattaaatCTCTTTTATGCAAACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197099 lncRNA downstream 4022 15896816 ~ 15898769 (-) True G133487
TU197081 lncRNA downstream 21214 15880944 ~ 15881577 (-) True G133476
TU197075 lncRNA downstream 39642 15862942 ~ 15863149 (-) True G133470
TU197074 lncRNA downstream 46857 15855664 ~ 15855934 (-) True G133469
XR_006247022.1 lncRNA downstream 99979 15800785 ~ 15802812 (-) True LOC122323540
TU197116 lncRNA upstream 17830 15937440 ~ 15938811 (-) True G133499
TU197207 lncRNA upstream 29376 15948986 ~ 15949462 (-) True G133554
TU197212 lncRNA upstream 68329 15987939 ~ 15996866 (-) True G133558
TU197220 lncRNA upstream 85502 16005112 ~ 16101982 (-) True G133564
TU197233 lncRNA upstream 97917 16017527 ~ 16024738 (-) True G133570
XM_043217412.1 mRNA downstream 48475 15848598 ~ 15854316 (-) True nfe2l3
XM_043217415.1 mRNA downstream 55417 15843683 ~ 15847374 (-) False cbx3a
XM_043217414.1 mRNA downstream 55417 15843683 ~ 15847374 (-) True cbx3a
XM_043217413.1 mRNA downstream 62883 15834904 ~ 15839908 (-) True snx10a
XM_043218293.1 mRNA downstream 162462 15736947 ~ 15740329 (-) True evx1
XM_043217262.1 mRNA upstream 2615 15922225 ~ 15924265 (-) False npy
XM_043218455.1 mRNA upstream 12274 15931884 ~ 15936477 (-) True fam221a
XM_043218456.1 mRNA upstream 12274 15931884 ~ 15935174 (-) False fam221a
XM_043218457.1 mRNA upstream 12274 15931884 ~ 15935172 (-) False fam221a
XM_043218098.1 mRNA upstream 56722 15976332 ~ 15983111 (-) False gpnmb
TU196955 other downstream 242071 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 254212 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 517525 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 533055 15366434 ~ 15369736 (-) True G133217
TU196661 other downstream 1010895 14891427 ~ 14891896 (-) False zgc:114119
TU197117 other upstream 2613 15922223 ~ 15924285 (-) True npy
TU197532 other upstream 361347 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 432259 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 440181 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 581335 16500945 ~ 16508560 (-) False mbpa

Expression Profile