RNA id: XM_043217926.1


Basic Information

Item Value
RNA id XM_043217926.1
length 1252
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC122323815
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3863228 ~ 3891965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACAAAGAGAAAGCGGATGGAGGACGTGAGAGGACACCCACCGACCGCTCGGTGGAGCTCCATCCTCGTCCTGACGGCGAGGGAGgcgggaaagagagaaagggagagaaaagCAAGAAGAAGAGGCAGAAACAGAAGTGGTTTCGGAATGCTCAGGATGAGCAGGTGGAGCAGGGAGAGGTGGAGCAGGACACGGTCCCATCCAGGAGGTGCACTGATGATCAGACTTCTCTTCAGGACGTCGTAACTACTGTAGAGGACGGCGATCATCAGGAGCTTCCTTCCAGTGCTGCTGTTGTCCCTGCTGTCACTGCTGAGGACCAGCAAGTGGAGGACGTCCAGCTTCAAGATCAGGACAGTCCAGaccGCATTTGCTGGAAATATTGTATTGGCAAGAAGTTGGGAGAAGGAGGATGCGGCTCCGTTTTTGAAGGGACCCGCCGTGAAGACGGCCTTCCAGTGGCTGTGAAGTTCACGGTGAAGACAGAGAACGAGCCGTACTTAAGCCTTCCTGAGCATCCCAGACCAGTTCCTCTGGAGGTGGCCCTAACTCTCATGGCCAATCAAGGCCCCAGCTGTCCCCACATCATAAAGCTACTGGACTGGGAGGACCAACCGGACCAGTACATTATGGTCCTAGAGCGGCCCTCGCATTGCATGGACATGCTGAGTTTTTGGGCGCATTACGATGGCCACTTCAGCGAGGAGATGGCACGTCATTTCATGCGGCAGGTGAccgatgctgctgctgcttgctGTTCCAAGAGTGTCTTCCATCGGGACAtcaaaatgccaaacatcctggTCAACGTAGAGACCCTAGAGGTCAAACTTATCGATTTTGGCTGTGGAGACCTCCTTAAAAAGACCTCCTACACCACCTATAGTGGGACAGCAAGGTACTGCCCTCCGGAGTACATCGAGAAGGGCGAGTACGACGGGAAGCAGGCCACAGTGTGGTCGCTGGGGGTGCTGCTGTTTCGGATGATGACCAGACTTTTCCCAGACAGCAGCGACATCGGTTTGATGGATGCCGATGCGTGGGAAGAGCCAGGCATCTCCGACGAATGCTGTCGTTTTATTCGAGGTTGCCTAAAGAGTGACCCAGAGCAGAGGCTTCACCTGGATGAGATGCACTTACACGAATGGTTTAAGTTAGCCCCTTCATCCCTCCAGTCCTAGCGCCTTGCGGGGCTGGCAGGCCATGGTTGCGTCTGGCGCCTTGGCCCGAGACAGTAGTTTAAGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 287038 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 321834 3465239 ~ 3541394 (+) True G130150
TU192360 lncRNA downstream 6096 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 38248 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 53430 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 258712 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 284303 4176268 ~ 4199257 (+) True G130338
XM_043217925.1 mRNA upstream 618 3859464 ~ 3862610 (+) True LOC122323814
XM_043217736.1 mRNA upstream 11219 3840241 ~ 3852009 (+) True lrp12
XM_043217737.1 mRNA upstream 11219 3843677 ~ 3852009 (+) False lrp12
XM_043217646.1 mRNA upstream 183855 3631071 ~ 3679373 (+) False epb41a
XM_043217928.1 mRNA downstream 157945 4049910 ~ 4053157 (+) True LOC122323824
XM_043218200.1 mRNA downstream 309268 4201233 ~ 4210130 (+) True LOC122324024
XM_043218108.1 mRNA downstream 405283 4297248 ~ 4302229 (+) True fam210aa
XM_043217299.1 mRNA downstream 499734 4391699 ~ 4393255 (+) True LOC122323460
XM_043217672.1 mRNA downstream 502620 4394585 ~ 4406579 (+) False ptpn2b
TU192216 other upstream 102243 3759867 ~ 3760985 (+) True G130208
TU192043 other upstream 769514 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 884812 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 969736 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 1076880 2785925 ~ 2786348 (+) True G129993
TU192476 other downstream 352803 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 502620 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 567950 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 567950 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 591735 4483700 ~ 4490450 (+) False pabpc1b

Expression Profile