RNA id: XM_043217936.1


Basic Information

Item Value
RNA id XM_043217936.1
length 1314
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122323836
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5569730 ~ 5571271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAAGCCAATTCAcaattttaggattattttcattaattgtgCTGTGCTAACTCAtatattgatgttttatatCTACAGAGGAATCGCTAGAATGGGAGATTGAAAAAGTGGAGAAATCCATGATCAGCATGGAGTGGCTGGAGGACCTGCAGAATACCATAGACGAGTTTCAGTCCAATATGGTATGCAATGTGAGCCGCCTTCGAGAGAACTTCAGAAAAATGCAGGAGGTTGCATCTAAAAAAGTTCTGACCATGAAGCCGAAAGGTAAACCAGGAAAAGAGCTGGATCCCAAATTAGTTAAAAGCATCCAGTCTCTGCCGCCCTGTCCCACGGTAGCAGAATTGAAAGCGAATTCAACCACAGCATCAGTGTATTCATCAGACCTGATCAGCGTGTTGAATAGCATCACCAAAACAGCCTCCTGCAGCCCAGCCATGAGCAAGGCGCTGAAACTATCAGCAGCGACCATTGAAAACCTCAACAAGGCTTTTCAAGATCACTGCTCAGAAATTAAGACCCTCAAGACACCTCAGAAAAAGAGCGACGTGGCTCAAGATGTGAACAGACGCGTCTCTGTTCCTTCTGTATATCAAAATGGATCTAAAGTCCAGCATCATATGGTGAAAAAATTGTCTGCCTTTCCTGTGAAACCCAAGGCAGATGATTTTGCTTTCCCTCAGGTCAAAGAACCTGTACGAGAGACAAATATTGAAGACACAGCTCCAAAAGCTCTCCTTGATGGAGCATTTCTTCCTGCCCCTGCCAGAACTTTTGCTCTCCGCAAGAACACAGGATCTGTCAAGGAGACGAAAGTTACCAGAGAAGAAATGGCAAACTTCACGTCACTTGAAGAGGTTTCACGACCTGTAGAGATGGCAAAAGTTTATGCCATGCCGTGGAAGAACGCCAGAGTCTGTCTCCTGTCCACACCGTCCTTCCTCATCTGTGAATCTGCCCCGAATTCAGACTCAAGTCAAGCCATCACTTCAGAAGTCCGGCAAGCCGAGACTCGCAGATATGCTTCTGCAGTCTCGGGCAGCATTGAGGAGCTGTACATGGAGAAAAACGAGGAGGACGTTGACAAACCGCTTCACGCAAGCACGAAACGCCCATCATTCGTGATTGACATCAAAGCTCAAGAAAACAACCTCCAGCAGCTGGATCAAgcttttcaaaataacagcatttcctCTGAAATGTACAACCTGTGCAGAGGAACCGTCAATCAGACACTTAAGAGCGTTGAGCTGCGTCTTGGATGTCTTTTACGGAGATACATCCAGCATGTGCAAATGAAGCAATTAAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193185 lncRNA upstream 20931 5548507 ~ 5548799 (+) True G130833
TU193148 lncRNA upstream 64316 5503266 ~ 5505414 (+) True G130813
TU192888 lncRNA upstream 164164 5404453 ~ 5405566 (+) True G130664
TU192908 lncRNA upstream 183613 5382816 ~ 5386117 (+) True G130676
TU192909 lncRNA upstream 184182 5385136 ~ 5385548 (+) True G130677
TU193218 lncRNA downstream 39717 5610988 ~ 5612338 (+) True LOC122324017
XR_006247088.1 lncRNA downstream 39841 5611112 ~ 5611964 (+) False LOC122324017
TU193224 lncRNA downstream 42993 5614264 ~ 5632428 (+) True G130855
TU193228 lncRNA downstream 88262 5659533 ~ 5670532 (+) True G130858
TU193233 lncRNA downstream 103024 5674295 ~ 5674844 (+) True G130861
XM_043218491.1 mRNA upstream 36843 5531960 ~ 5532887 (+) True LOC122324215
XM_043217321.1 mRNA upstream 69134 5484922 ~ 5500596 (+) True eya3
XM_043217323.1 mRNA upstream 69134 5484940 ~ 5500596 (+) False eya3
XM_043217322.1 mRNA upstream 69134 5484940 ~ 5500596 (+) False eya3
XM_043218181.1 mRNA upstream 86062 5471782 ~ 5483668 (+) True si:ch211-195b13.1
XM_043218363.1 mRNA downstream 12234 5583505 ~ 5585655 (+) True LOC122324139
XM_043216990.1 mRNA downstream 41797 5613068 ~ 5614130 (+) True LOC122323266
XM_043218065.1 mRNA downstream 145425 5716696 ~ 5717681 (+) True rpa3
XM_043218150.1 mRNA downstream 154097 5725368 ~ 5739185 (+) True col28a1a
XM_043216946.1 mRNA downstream 174559 5745830 ~ 5752917 (+) False LOC122323254
TU192862 other upstream 255552 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 255552 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 390053 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 406331 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 586486 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 12234 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 174530 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 213859 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 891812 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 948649 6519920 ~ 6526080 (+) True G131042

Expression Profile