RNA id: XM_043217954.1


Basic Information

Item Value
RNA id XM_043217954.1
length 2156
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122323849
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8668062 ~ 8671099 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatatatatacatttgttttattgatcaGTATCATCTTTTAACAGTGTATTTATGGAGTTATACAGTATTTGTGCTCAAGAAAACCTTTCCTAAACGTCTTTTTGGTACGCTAATGCACCCGAGAAAACGCTCTTTGCTTACCCAACGCTTGCCTCGCTTCGTGCCGTGTACGCACCCTTGTGGATCTTTAAAGCTCTCAAATGTGAATTTGCGCTTATTGCGGCATTTAAAACGCAGTTTTGTAGATCACCTGAcctatttttgcaatattttctaTGACATTGAGAATTGTATGGGAGCAGGGGCTTAAATCTACGACAAGAGCACATTTTCGAGGAATGTACCGAGTACAGAAAGGCTACCGAAGTATACGCCTCACAAGCACAACTGTTTGGTAAGATAGTTTCTTAATATGTATAACACGTTATTTGGCATTTACCGCACAAACTCCTAAAGCCATAATGATACAGAAGTCGATATATTTAAGGCCGTTTTGTGGTTTCTATTTATCAGAATTATCTATAGCAGATATTCAGAAATAATCCTTTTGTTTACGCTGTTTTCTGTATTCAGTCACAGAAGTGAATGACTGTGTTTTCTTGCTTTTGAGAGTTTGTCTGACGAGCACCGTTACAGTATTTGACTCTGGGCATTGGCGATGGCTCCTTGAGAATATCTTTGCACAGAGACATCAAGCAAGAAGGTTTAATTAACATGCATTGCCTTGTATTCATCTCAGACAGGAGCTCAGCGAAAATTCAACTGCATTTACCGTTCAAACCtcgttaaaatgtaaattaatgtcCTTCTTGATAGGAAAGCTGTCGTTATTGTTTCGTGAGCGCGTGGCTGTGTGTGTCCAGGGCTTGAGCGCACCGCCTGCAATAGCTTCAGCTAGTACCGTTTGATTGAAAGCAGATTTCGTTTGATATCACAATGCTAATGTTCCCTCACcgtttcattttcttcttttcgtCAAGTTTACTGTATTTCCTCTGCTGAAAGTGgcaataaaatttatttttacataattaccaGATATGGcattgtgctgtttttaatgcttggtaatttttatatatatatatatatatatattttacatttactacaTGTACCATGTGAGAAATAACTGTAACAAAACACAAGTTCATCGTTTCGTGaggcaaagcatgctgggaactagAAATTCACAGTGCAGTTTCAAgcaataacagcaacaaaaaaaacgaaattacGAATTTAATTGTGctgctttatttcatttattacattgaAAAAGCAGCGTTTGTTGTTGGCGTATACGTTTTTAAGGAGGCTTTCGTGAAAACGTACCGAATGGATGATGTCACGATAACGagctaaattaaatgaaaacaacgtcctgttttgaaataaaaacccAAAACGCTTTTTTGAAAAGTGTTTCGAGAGAGGCAGACGCATGTTTCGCTTCCTCTCCTCATTTTACGATAATTACATCGAGCCGTATTTTTCCTCTGGCGTGGGAGAACCAGACCGAAGCCACAAAAGTAAGATCCTGAAGGCCGGCCGTCTGATCCGGAACACGCGGCTGCCCGCAGCAGAGAGAGCAGGCGCGGCTCGGGACGTTGGGATATTGAGCTACACAGGAGGTTATGAACATGCAGCTCAAGCAGCAGACAAGTACATGGCAAGCATGACGGAGCTCCTCAAGACACCTGGCCTTACAGAGCAGGACATCGTTCGAGTTCTTGAAGGCCTCAGTGCAATATGCTACCTCCACGTCGCCAATCAAAACACGGCACAAGCACTTGGTCTCCCAGACACCCTGCTGGAGTTTGTGTCGCCAACCAGCAAACTCTCCTTTACGTCACAGCGCTGGAGCTGCTACCTGCTCAGCATCCTCTGCTGCCACAACATCCCCATTATCTGCCACCTCAAGGACGCCGAGGCCCTGCAATCCAATCTGGAGAAACTAGCAAGTCTGGACTGGGAGAAATGGCCGTTAAACTACGCTCTTGAGCTGCTCAGGGTTTTAAGACTCCAGCAGAGCGCGAAGATGGACAATTTGCATGAAGAAGACGAGCTGAAGGGCTGCCCTTTTGCCAAGAGTGGTCACATGTTtggaaaacaattaaaagagCACGTGTACAAAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194432 lncRNA downstream 9048 8658159 ~ 8659014 (-) False tdp2b
TU194433 lncRNA downstream 28405 8639428 ~ 8639657 (-) True G131675
TU194405 lncRNA downstream 112470 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA downstream 112470 8551961 ~ 8555592 (-) True G131654
TU194226 lncRNA downstream 312945 8353533 ~ 8355117 (-) True G131511
TU194440 lncRNA upstream 53407 8724506 ~ 8775727 (-) False hey1
TU194441 lncRNA upstream 53407 8724506 ~ 8786729 (-) False hey1
TU194439 lncRNA upstream 77926 8749025 ~ 8775727 (-) True hey1
TU194471 lncRNA upstream 248941 8920040 ~ 8920695 (-) True G131697
TU194658 lncRNA upstream 368849 9039948 ~ 9048451 (-) True G131820
XM_043217955.1 mRNA downstream 3122 8660423 ~ 8664940 (-) True c19h6orf62
XM_043217952.1 mRNA downstream 8576 8654498 ~ 8659486 (-) False tdp2b
XM_043217951.1 mRNA downstream 8576 8654498 ~ 8659486 (-) True tdp2b
XM_043217950.1 mRNA downstream 10732 8654498 ~ 8657330 (-) False tdp2b
XM_043217454.1 mRNA downstream 40070 8600106 ~ 8627992 (-) True necab1
XM_043217959.1 mRNA upstream 1032 8672131 ~ 8726317 (-) True ripor2
XM_043217958.1 mRNA upstream 1032 8672131 ~ 8713470 (-) False ripor2
XM_043217962.1 mRNA upstream 1032 8672131 ~ 8713056 (-) False ripor2
XM_043217960.1 mRNA upstream 1032 8672131 ~ 8705946 (-) False ripor2
XM_043217899.1 mRNA upstream 56160 8727259 ~ 8738786 (-) True si:dkeyp-120h9.1
XR_006247071.1 other downstream 347161 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 347177 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 538792 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 538804 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 1062919 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 56160 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 80270 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 637621 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 988796 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1636859 10307958 ~ 10311928 (-) False elp2

Expression Profile