RNA id: XM_043217959.1


Basic Information

Item Value
RNA id XM_043217959.1
length 3364
RNA type mRNA
GC content 0.55
exon number 22
gene id ripor2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8672131 ~ 8726317 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGCAGAGGGAGTTGAGTTCCCCTGACTCATGCATAAAATATAGATCTCAGGCAACGCAAACAGACTTGCTGAGACAAGAGATACGCAGCCAGACAGAGAAGAAAGAGTCCACTTTGAAAACTGGACAGAGGCCCTCAAAGGGTCTGATGTTTGCTTTGGATATGAGCTCATGTTTGGGGGACAAGAGGAAAAGTTTGGTCTGATGCCGGTCGATGACGTCCTGTGGGCACGATCTGGCGCACAGCCATGGAACTGTCGCGAAAGCTGCACTGGATCCGCGAGCGGCCCTGGAGGGCCCGGGCCCGTCACAGGAAGTTCAACAGAGTGTCCTCCCGCTTCCCAGATATCATGGCTGCCGGCACTCACTCTCCTGGAGGGCCCAATGGCATCATCAGGAGCCAGTCGTTCGCCGGCTTCAGCACCCTGCAGGAGAGACGCTCACGGTGTAACTCCTTCATGGGGAACTCAGCAGTGCAGAAGAAGCCCATCTCAAAGCCCAGGAAGCCCCATCTGTCCGGGCACAagtccagcagcagcagcagctcacGAGAACCACAGCCCAAAAGAGTGGAAGAAGTTTATGGGGCCCTCAAACAAGGCCTGGATGAATATCTAGAGGTGCACCAAACAGAGCTGGATAAACTCACTTCTCTTATGAAAGACATGAAGAGGAACTCCAGACTGgGTGTGCTGTATGATCTGGACAAGCAAATCAAGACCATAGAGCGATACATGCGACGACTGGAGTTCCACATGAGCAaggtTGACGAGCTGTATGAGGGCTTTTGTATTCAGAGAAGGTTGCGTGATGGCGCCAGTAAGATGAAACAGGCCTTCACCGCTTCACCCTCTACCAAAGGCACACGTGAGAGCCTGGCAGAGGTCAACCGCAGATACAAAGAGTACACAGAGAACATGAGCACTTTTGAGGCCGAGCTGGAGAACCTGTTGGGAGAGTTTCATATCAAAATGAAAGGATTGGCTGGTTTTGCCAGGCTTTGTCCCGGAGATCAGTACGAGATTTTCATGAGGTACGGCCGACAGCGGTGGAAACTGAAGGGGAAGATCGAAACGAACTCCAAGCAGAGTTGGGATGGAGAGGAGATGATCTTTATGCCCCTCATTACAGACCTCATCAACATCAAGGTGACGGAGTTAAAGGGGTTGGCCACTCACATCTTAGTGGGTAGTGTGATCTGTGAAACCAAGGACCTGTTCACCGCTATGCCTCAGGTGGTAGCTGTAGACGTCAACGACTTGGGAACCATTAAACTTAACCTGGAGGTTGCCTGGTTtccgtTTGACGTAGAGGATCTGACACTGTCCTCAGGAAATGTGAGTAAAGCCACCGCCCTTCAGAGACGAGTTTCAGTGTACAGCCAAGGCACACCCGAGACGCCCACTTTCCAGGACACGTCTTTCTTTTCCACTTTACCAGACGATGTCTTTGAGAACGGAGGCTGCGGTGTGGCCGAATGCAAGCGCCTCTCTTTCACCTTCTCTGACACGCCCACCTCAAGCCCCGCCCCCATCCAGTCAAACCCTGAGATCACCGTCACGCCCCCTGAGATAGACCCTCCCTCCGAACCGGCTCCAGCCTCTGAGGACCAGTCGGTTGaggaggagtgtgtggaggAAGACTGCGGCAGCGTCAGCGTCAGCGATCCAGACCTGGAATGGGACCAGAATGAGGCCCAGCGGCACAGCACAGGCTCGGTGGCCCACTCGCTGTGCTCCGAGAGTCAGCTGTCTGCGGTGGGACCTGAGGATGTGGTGTTCTTGGAGCCCAACCTGCCTGATGAAGCCCTAGAGCTAAAGCCGGTGGAGCTGGATGGAGAGGAAGGCAGTCTGACCAGACAGCTGGTGAGGAGGCTCACCTCCTCTGACATGCTGCCCGAAAGCGGAGCGGTGAGCTGGTTTGGAGAGAGCAGCAGGACCTTCCAGGAGAGCAGCCTGGAGGAGGCCATTCAGTCCCTGCTCCTGCGGCTGGAGAGCTTAGGCCAGCGCTGCGGGGAGCTGCAGGACTTGGAGCAGGAAGTCATGAGACTCGAGGACCTGCTTAAGTGTCGGGTACCTGCTCATAGGAGCCGTTCATCCAGCCTCAGTTTGACAGTGGAGAGCGCTCTGGAAAGTTTCGACTTCCTCAACACCTCCGACTTCGATGACGATGACACAGGAGATGACGCTGCCACCCTCTCACGCGCCGTCTTCTTTGACATGGAGTCAGAGAGAATTGGgtcaggtcaaCATCCAGAAGCAAGAGGCCACCTGAGTGAAGCCCTCACAGAGGACACTGGTGTGGGGAACAGTGTGGCCGGCAGCCCGTTACCTCTCACCACAGGAAACGAGAACCTAGACATGGCCATTGTTGTTCATCTACAATACTGCAGTCATCTCATTCAGTTGTTGACCTCAGGAGGAAGCCAGGCGCAGCACAAAACATACCTGCACAAAATAACCACTCAAACACTTCTGTTGGAGGAGCTCAGTGAGAAAAACTTTGACAGACCGGGCAGCTGCATTTTAGTGTCTGATATGTTGCCTGGGCTGGAGGAGCACCCGGCGCTGATGTCTCTGTGGTCCGACTGCAGTGGTGGTCTGTTTCATACTACACTGGACCGAGTGCTGAAGCACATGCATCTCAGCTTTGCCTTACCACTGCAACAGATTCTGCCTCACTCTCCCGACTCAGTGATCAGGATGGTTGTGAATGAGATGATGGACAGGGGCGAGCTGGCCTCTTCCTTGTGTCCGTCACTGTCCCCTCTGGCACAGGATGTCCTCACTGTGTTTCAGTTTCACCGTTACACTGTCGAACACGATGTCACAGACATGGAGCGACACCTGCTGGATTTAGCCAAAGAGGTCATGCTTGAAGAGGCCCTGAGCTGTGGAGATACAGAGCGCTGCGTGAAGGAGCTTCAGGAGGTGTCCGTCATGTGTCTCCAGCCCCGCCCTCAAACCCTGTGGACCGTGGCGGGGCTGTTGACCTCTGATGACCCCGATGTGATGAAGGCCGCTACCGCCTTCCTCTCCTCTGCTGCCTCACACAAACCCttcaggtcaaagGCTGTTGATTGTTACACACAAACCTTATCAGAAATAGACAGATCAAGAGCTGCATGTGCCGCTTTGAGCTGCCTGCAGGCTGTGGAGAGCATTGATGCTGTGGTGTTACTGTGTGACTCGGCAGATGAAGATCTCCGCCAGATTGCCATAGAAACTCTCCTCACTTTCGGTGAAGACGGGCGGCTGGCATACGAGCAGTTGGACACAGTGCCGAGGGAAATGGTGCGGCTGGGGACTCGCCGCGGTAACGCCGTTACCACTTCATTTTAGAAAAACGACTCGTTATCCCTCAA

Function

GO: NA

KEGG:

id description
K24818 RIPOR, FAM65; Rho family-interacting cell polarization regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194432 lncRNA downstream 13117 8658159 ~ 8659014 (-) False tdp2b
TU194433 lncRNA downstream 32474 8639428 ~ 8639657 (-) True G131675
TU194405 lncRNA downstream 116539 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA downstream 116539 8551961 ~ 8555592 (-) True G131654
TU194226 lncRNA downstream 317014 8353533 ~ 8355117 (-) True G131511
TU194439 lncRNA upstream 22708 8749025 ~ 8775727 (-) True hey1
TU194471 lncRNA upstream 193723 8920040 ~ 8920695 (-) True G131697
TU194658 lncRNA upstream 313631 9039948 ~ 9048451 (-) True G131820
TU194665 lncRNA upstream 354533 9080850 ~ 9081105 (-) True G131827
TU194681 lncRNA upstream 415536 9141853 ~ 9217661 (-) True G131838
XM_043217954.1 mRNA downstream 1032 8668062 ~ 8671099 (-) True LOC122323849
XM_043217955.1 mRNA downstream 7191 8660423 ~ 8664940 (-) True c19h6orf62
XM_043217952.1 mRNA downstream 12645 8654498 ~ 8659486 (-) False tdp2b
XM_043217951.1 mRNA downstream 12645 8654498 ~ 8659486 (-) True tdp2b
XM_043217950.1 mRNA downstream 14801 8654498 ~ 8657330 (-) False tdp2b
XM_043217899.1 mRNA upstream 942 8727259 ~ 8738786 (-) True si:dkeyp-120h9.1
XM_043217901.1 mRNA upstream 942 8727259 ~ 8738782 (-) False si:dkeyp-120h9.1
XM_043217900.1 mRNA upstream 942 8727259 ~ 8738299 (-) False si:dkeyp-120h9.1
XM_043218166.1 mRNA upstream 27881 8754198 ~ 8757673 (-) False hey1
XM_043218138.1 mRNA upstream 61896 8788213 ~ 8805478 (-) True zbtb10
XR_006247071.1 other downstream 351230 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 351246 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 542861 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 542873 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 1066988 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 942 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 25052 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 582403 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 933578 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1581641 10307958 ~ 10311928 (-) False elp2

Expression Profile