RNA id: XM_043217969.1


Basic Information

Item Value
RNA id XM_043217969.1
length 951
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC122323863
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11119263 ~ 11121001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTGCGAGACCGTGTGAGGAGACCTCTAGAATAAAACCTCATCGTTTCTGGAACGCGTTAGGACCGTTTCCCAGGTCAGTGTGGATTCATCCCTGCACACCAGAGGACAGCCTGGACAGAGCCTGCGGGAGAGTGCTGAAGCGCTCTGTTCTGGCCAGCGAGGGCGTTTGGCCGCATTTACCAGAAAATGCGCATTTGTTTGCGGAAGACGGCGCTATCCGGAGCCGCAGAGGACATTACGGCAGTCTATCCAGTCAGAGCATGGGTCATCAAAAGTTAGACAAGGTCATGTTAATGACTCAGCATAACATGACCCAGACTCTTCTGCAGGGGCATGTTGATGCCACGTGCCCATGTTTGCCTGATGATAGATGCAGACATGGTCATGAACCTGACAAGACCATGGAGATCATAAGCCAGGAGCAGGCTGACGGAAATAAAACCGAGGAGTTTCTTGAAGAAATTCTACCTAAACAGGCCACACGGAAAGCAGACATCCCTGAGGGGCCCTCAGACAAAGACTTTCCTCCACTTCCACCTCCTGCTTCACCGCGGGTGGACAGGCCACCACAGCAAGCAGCCATCTGTAAAAGTGGCTCCTATAAAGCAACTCTCTTAAAAGGAAAACCAAACATCCAATCGCGCGGTAGCAAACCACAGAGGGCACAAAaaccagctaaaaaaaaacatccaaaagtCTTGGCTGAAACGACCCCAAAGATAGAAGCACGAACAGCCCAGGGCTTGATTGACCAAAGTAGTTCCCCCCAAAGTGCACGCAGGAAGGAAGTTAGGTTGGATGGACGAAGTTCGTTTCCAAGGTGTTCCCATCTACCTGTGTCTGAAGACGTCCGAATGGCAGATGAGCAGATAATACCTAAAGACCACACAGGTAAAGGTAAATGCGATATTGACATTCCGTTACATCTGCACCATGCACATGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247072.1 lncRNA upstream 40325 11076694 ~ 11078938 (+) True LOC122323901
TU195194 lncRNA upstream 238688 10875871 ~ 10880575 (+) True G132180
TU195038 lncRNA upstream 421427 10632648 ~ 10697836 (+) True G132081
TU195039 lncRNA upstream 480564 10637441 ~ 10638699 (+) True G132082
TU194908 lncRNA upstream 517796 10582750 ~ 10601467 (+) False G131987
TU195244 lncRNA downstream 273556 11394557 ~ 11394949 (+) True G132227
TU195309 lncRNA downstream 586011 11707012 ~ 11707249 (+) True G132266
TU195310 lncRNA downstream 586520 11707521 ~ 11708463 (+) True G132267
TU195319 lncRNA downstream 587969 11708970 ~ 11709872 (+) True G132269
TU195351 lncRNA downstream 711172 11832173 ~ 11832908 (+) True G132291
XM_043217231.1 mRNA upstream 335105 10763151 ~ 10784158 (+) True angpt2b
XM_043217131.1 mRNA upstream 701167 10416474 ~ 10418096 (+) False zgc:91910
XM_043217132.1 mRNA upstream 701167 10416493 ~ 10418096 (+) False zgc:91910
XM_043217133.1 mRNA upstream 701167 10416594 ~ 10418096 (+) False zgc:91910
XM_043217130.1 mRNA upstream 705501 10412271 ~ 10413762 (+) True wdyhv1
XM_043217871.1 mRNA downstream 386271 11507272 ~ 11510522 (+) True LOC122323768
XM_043217874.1 mRNA downstream 390342 11511343 ~ 11513891 (+) True LOC122323771
XM_043217870.1 mRNA downstream 394527 11515528 ~ 11521236 (+) True LOC122323767
XM_043217887.1 mRNA downstream 401228 11522229 ~ 11523180 (+) False LOC122323782
XM_043217976.1 mRNA downstream 414962 11535963 ~ 11582937 (+) True LOC122323870
unassigned_transcript_2194 other upstream 1190790 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 1480302 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 1580770 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 1955191 9160391 ~ 9164072 (+) False LOC122323856
TU194231 other upstream 2746443 8370801 ~ 8372820 (+) False yars1
TU195256 other downstream 401265 11522266 ~ 11523881 (+) True LOC122323782
XR_006247120.1 other downstream 2184005 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 3666543 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 3713636 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 4028303 15149304 ~ 15187839 (+) False LOC122323518

Expression Profile