RNA id: XM_043217976.1


Basic Information

Item Value
RNA id XM_043217976.1
length 2649
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC122323870
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 11535963 ~ 11582937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAACAGTTCTTCACTCAGAAGCCCAGGCGCGCGAGAATGGGCGAGACAGACGGAGGATCTGCGACCTAAACCAAACTATGTGCTCGCGGAACTGACTGCGGGCGCGGAGATTGAAACTCGCTCGGTGGGGCAGGCACTCATCCCGCTCGTGTCTCAGATTACCACACTGATCAATCACAAAGACAAGCTCAAGAAGACGGAGAAGACCTTACGGGCCATCCAGAGAGTGGGGCAGGCGGTCAGTGTTGCAGTTGGCCGCTTCGTGGCGGTGGGTGAAGCCATTGCAGCAGAGAATGAAGACTTGAAGGACGAGATGGGACTGGCTTGCTTTGAGGCCCGGAGAGCAGGCACTGCCATAGCTCAGCTGACGGATGTGTCCTGTCTGGAGCAGTGTGAGGGCGATGGGCGCAGCACTGTGTTTAGTGACAGGACCGGCATGGTGAAAGCTGCTCGCATGCTGCTCTCCTCTGTTACCAAAGTCCTGGTGCTCGCAGACTGCATCGTTATCAAACAGATCATAAGCTCCCGCAACAAAGTGCTGGTTACCCTGGAGCAGCTGGAGAGAGTCAGCACTTTTCAGGAATTTGTCCAAATCTTCAGCCAATTTGGGAACGAGATGGTAGAGTTTGCCCATCTCACAGGAGACAGACAGAATGATCTgaaggatgaaaagaaaagagctcGGATGGCCGCCGCACGTGCTGTGCTGGAGAAATGCACCATGATGCTCCTCACAGCCTCTAAGACTTGTCTGAGACATCCAGACTGTGAGTCGGCACGGATCAACAAAGAAGCAGTCTTCCAGCGTATGCGTCTGGCCCTGGAGCAAGTCATTGAGATTGTGACTGACACAAGGAGCGGTGGGGAGACCAAAGCACTTCCTGTCAGCATCTACGCTGGGATTAGAGACTTTAAGGTTAAAGTGGAGGGTCTGAGAGACTCTCTGTACTGTGTGTCCTGTGAGGCTGTGGCGGCTCAGCTGGAAGCTCTGGTGGAGAAAACCGAAGACTTTACAGACTCTGCCTACACCAGCCATGAGCAGAGAGAGACAATCATACAGCTCTGCCAGATCACACGTCAGGAGACCAAACAGCTCATCAGCACATGGAGACACGCGCAGCAATCGCTTAAAGCCAAAGAGGCCACGGACGAGGTGGAGCTCTCTATTTTGAAGACTTGTCAGAGTGTCAGCGATCTCAGGCGAGAGcTTCATAGGGTGGCGGTGGGAAGGGCCACTGAGCTGCTGAAGCTGCATTCAGATCATCTGGTGCTGCAGGCCCTGAAGGCCTCCGGTGGGGATGGAAACCTGGAGGCTGTGGCTGATTATGCCGGCACACTGACTGAACACAAAGAGCAACTGGTGGAGACTTGCCGTTTGCTCTGCCACATTTCTGGGACTGAGCCGCTGGAGATCACCTGCGTTCATGCTGAGGAAACTTTCCGTGTCATTGGTCCTCAGATCATCTCAGCAGCACAGACCCTTGCTCTGCACCCCACCAGCAAGATTGCCAAAGAAAACCTGGATGTGTTTTGCGAGGCCTGGGAGTCCCAGCTGTGCGACATGGCCATCCTACTGAAGGAGATCAATGATGTGTTTGAGGGCCGCAGAGGTGATAAGAAAACATATCTGTCTCTACCCAGACCAGGGAAACACTCTGCCAACCTGAAGACGGTGAAGGCTGCCAAACTTGACGCTGAGGAGCAAACCACCATCGCCAAGCTTGGGCTGGAACTGTGTCTCCTCACTTCAGATGTGGACTCAGAGGTGGAGCGCTGGGACGAGCAGGACCACGACATGGTTCGGCTGTGTCAGATCATATCCAGCATGGCTTATTCCATGTACCTCTTCACCAGGGGGGAAGGCCTACTGAAGACAACTTTGGATCTATTCCACCAAGCCGAGgtgttGTCAGACCAAGGTCTCCAGCTGTGCCACATCCTCCACTCTCTCTGTGCGCAGCTGCTGGATGAAGACAGAATCCTTATTCTGTCTGAGACCGAGAAGCTGTCAGCCGCATGTCAACAGCTGCAGGTCTGTGCCAAGACTCCGGTTCAGGGCAAGAGCGCCATCTTTCAGAAGGTCGACTCATCCATACAGAATACCAAAGGCATTTTGACAGTGGTGGTATATTTACTGCCCATCTGTAATAAGCTCATCAGAAAGTGTAAAGCAGAGCGCAGCTGTCTGGCTTCACCTCAGCACTGGAGGGAGAAGCAGCTGAGCACGACCGTCAGCGAGGAAAATCTGAACGGCAAAGGCTCCAACGGCTTCGGGGTCAAATCCTTGGAGCAACACATGGCCAATCTAACATTCCTGGAGAGCAAATAGCTCTGAAAACCAAAGGCTCTTCTGCCTGTTGTCGCGCACACAGTGCATGGCAATGCACTCGCACACAACGTGCCATTCTTTGTGCTTCTGCCCATTCGCTTTGTGGTGTACGATAGCGTTAGCATTACCAGCCTCATTCCAGATaccaaaaaaaatagataaaaaccCTTCATTGCATGTGTTCAGGTCATTATGCGATTCTTTCAAGTGTAATGGCTGGTAAATAAGCTACGGTTTTAACCGAATATTCAGCTGCGTTTCTCGTGATTAGCCAACATTGAGGTGTACGTGGTAAAAGTtttgatgcaaaaaaagaag

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195244 lncRNA upstream 141014 11394557 ~ 11394949 (+) True G132227
XR_006247072.1 lncRNA upstream 457025 11076694 ~ 11078938 (+) True LOC122323901
TU195194 lncRNA upstream 655388 10875871 ~ 10880575 (+) True G132180
TU195038 lncRNA upstream 838127 10632648 ~ 10697836 (+) True G132081
TU195309 lncRNA downstream 124075 11707012 ~ 11707249 (+) True G132266
TU195310 lncRNA downstream 124584 11707521 ~ 11708463 (+) True G132267
TU195319 lncRNA downstream 126033 11708970 ~ 11709872 (+) True G132269
TU195351 lncRNA downstream 249236 11832173 ~ 11832908 (+) True G132291
TU195358 lncRNA downstream 477100 12060037 ~ 12060379 (+) True G132298
XM_043217887.1 mRNA upstream 12783 11522229 ~ 11523180 (+) False LOC122323782
XM_043217870.1 mRNA upstream 14727 11515528 ~ 11521236 (+) True LOC122323767
XM_043217874.1 mRNA upstream 22072 11511343 ~ 11513891 (+) True LOC122323771
XM_043217871.1 mRNA upstream 25441 11507272 ~ 11510522 (+) True LOC122323768
XM_043217969.1 mRNA upstream 414962 11119263 ~ 11121001 (+) True LOC122323863
XM_043217856.1 mRNA downstream 181937 11764874 ~ 11772074 (+) True LOC122323759
XM_043217869.1 mRNA downstream 485395 12068332 ~ 12070856 (+) True LOC122323766
XM_043217885.1 mRNA downstream 493644 12076581 ~ 12077830 (+) True LOC122323780
XM_043217979.1 mRNA downstream 498311 12081248 ~ 12084831 (+) True LOC122323872
XM_043217877.1 mRNA downstream 514154 12097091 ~ 12098898 (+) True LOC122323773
TU195256 other upstream 12082 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 1607490 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 1897002 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 1997470 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 2371891 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 1722069 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 3204607 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 3251700 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 3566367 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 3773803 15356740 ~ 15361845 (+) True anxa14

Expression Profile