RNA id: XM_043217990.1


Basic Information

Item Value
RNA id XM_043217990.1
length 2439
RNA type mRNA
GC content 0.45
exon number 9
gene id si:ch73-109i22.2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16959151 ~ 16966115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTTCAAAAGCAGATCGTCAGATTGTTCATTTGAGCTTTAGTACATcagttaaatatttcacaagaaGTTTCAAAATGAAATCTGCACACTATCAGCTCTATGTGACCTTTTTCCGCTCTCTATTTCTCGCCCTCGCACATGCATTTAAACAGGATGAGGCAGAAACACTCAAGAACCGATAGGAAGAGGTAGCGTTTTACATCCTGCGCTTGAGAATGGACTTTGACTACCAAAAGATTAAAGATGCTGAATCTCAGCAGAGAGAGGAGCGACTGAGCGATCTTTCTGCCCACTACCCAAGACCAAAGCCACGTCCATTTCTGGATCCAGAGAACAATCTCACGACCAAGAAACCGCCAGTAAAACCCCGGCGGAGCATAAAGATTCGTTCCACAGCACAACAAAAGACAGAGCAATTAGACCAGGGCCAGCAGAAGGAAAATGAGACCACAGTGAAGCGGATAGATCCTGCTCTGGTTTTGGGTCCCTTGAGGCCCCTGGAGTGTCTGTCTCCGTCTCTGCGCGCTCACACTCTGCTGTGGTTTGAGAGAACGCAGCTGCCTCGACTGCACAGGCCCGGACAGCCTCTTCCTCGCTGGCTCCATGGTTTCGCTACACGCAGGGAAGCAGAACAGCTGCTGCAGGATAAGCCGCAAGGCTGTTTCCTGTTGAGGCTCAGCGAGTCAAAGATTGGCTTTGTGCTGTCTTACAGAGGAGAAGACCGATGTCGTCATTTCATAATTGAAGAGGAGGAGTATGGATCATCTGGTAGTGTATATCTCATTGCTGGAGAACACAGCCATCATAGAAGCCTGGATGAGCTAATCAGCTACTACACCCATAATCCTGTGGGGCCTTTTAATGAGATGTTGACTGTACCTTGTATGCAGCCTGATGGGAGTTTTGAGGAAATTAATAGGTGGAGGGTGaaagatgaggaagaggagaaaaaTGGAAAAGCAACAGATCGAGAGAAGCAGACAAACCTGGCCGAGGCCATCGGCCCAGCTGTTCTGAACTCCTTACACACAAACCCCTCCAGTGAGATCACTTCTGCTACAGAAGAGCCTGTGCAGTATGCAGTCGTGAGAAAACCACTGAAAAAGACCCTCTCGCTGCCAGAATGCAAGTGTGGAACTGAAACAGAGCCTCCTGGCCTTGAAAATGGCAGTTCTGACGTTGCTGAAAGCCCCTCAAATCTTAATCTAAAAGGAGATCAAGTTTCTCTTGTGGATGTCCAGTATGCTCGAGTTAACAAACCCCCCAGACTATTATCAGAAAACACCCCCAACCTCACTGCCCACCCTGACCTTCAGGGAGCAACAGCAGCCTTTACCCCTCCATCCATCCCAAACTTCGACACGACAGCAGCAGACCCGAAATACTGGAAACTGGAGCCAATGCACACTTACGAAGAGACCCCCCACACACGCAGTCGTCCAGAAGAAATTGACTGCTATGCTGTCGGGTGGAGGAGGCAGGCGGCGGGGGATGAAGTGAACCTTCCAAAGGATCACCTGTATTCAGAGGTGAACATCAAAGGGGCCCAAGAAGGCGTTGCTGTACTGAGACCCGGGCCTAGTCTTCCTCTTAGACCGCCCCCGAGATCTGCTCCTTTGCGACCCGAGCTCATCGGGCAGCTCAACCTCAACACTCCGGTTTTCATCATTCAGATCAGCCGTATATGAATGCTTCCTCCAGCTCCATTTATGAGCAGATCCCAGAAAGACCAAGCAGCTCTAGAACATGTCTGCCCCCACCGAATCCCAAACGCTGAGCTTAGGATGGTGTAGACCTGAATTCTCCAAGAGCTTCTTTTGTGTAACACTccgtataataaaaaaaaaaaaaaaaaatgcataatggtAAATATTAGCATGGCATATATCATGTGTACCAAAACATTACATTGCTTATAAcctgtacatacatttataagGCTTCCTAATAGTGACCTCCCCATGGAGATGTTTTTGATCTATTTAAATTGTATCGGAAATACAGTTTTTCCAGCCACTCGTTTAAAGATGTACCTGCTCAGCAAATAATTTcataacttttaataaaaaaaataaaaatactatttggGTTTACAACCACTGATTTATTAAGTGAACTGCTGCCCTTCCTTGTAAAAGTTTGTTGCTCTTAGCTGATATTATCACCATAAAAGTACAAGAATACATTAAATCACTGCATGAGAAGAACATCACAGAACAGACAGACGAAAGAGCATTTCAGTGAGTGACCAGACACACAATAAGAGCATTTCTGTAAAACCCTTTTTATTTCCACAAACAAGCCCCCCCCATTGATCATGAAGAGCTGTACTTTTCTTTAGCATTTgagaataattacaaaaaaaaaaaaaaaaaaaaaaaaaaatttaagcgACCCTAGAATGgccattttaaatatcaaaagcAGTTGGTAATT

Function

GO: NA

KEGG:

id description
K08273 SH2D2A, VRAP; SH2 domain-containing protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197671 lncRNA downstream 76739 16877664 ~ 16882412 (-) False LOC122323645
XR_006247038.1 lncRNA downstream 76752 16867857 ~ 16882399 (-) True LOC122323645
XR_006247037.1 lncRNA downstream 91799 16854238 ~ 16867352 (-) False LOC122323643
TU197712 lncRNA upstream 7391 16973506 ~ 16978942 (-) True G133856
TU197725 lncRNA upstream 7916 16974031 ~ 17041793 (-) True G133865
TU197704 lncRNA upstream 51422 17017537 ~ 17020967 (-) True G133852
TU197741 lncRNA upstream 57131 17023246 ~ 17024514 (-) True G133879
TU197749 lncRNA upstream 89986 17056101 ~ 17056311 (-) True G133886
XM_043217586.1 mRNA downstream 14628 16901770 ~ 16944523 (-) True grb10a
XM_043218519.1 mRNA downstream 127404 16814826 ~ 16831747 (-) True nudcd1
XM_043217301.1 mRNA downstream 162631 16793249 ~ 16796520 (-) False LOC122323461
XM_043217300.1 mRNA downstream 162634 16793249 ~ 16796517 (-) True LOC122323461
XM_043218348.1 mRNA downstream 175926 16774625 ~ 16783225 (-) True eif3eb
XM_043217318.1 mRNA upstream 75860 17041975 ~ 17042989 (-) True msmp2
XM_043217136.1 mRNA upstream 82424 17048539 ~ 17051619 (-) False si:ch73-347e22.8
XM_043217135.1 mRNA upstream 82424 17048539 ~ 17051516 (-) True si:ch73-347e22.8
XM_043217739.1 mRNA upstream 106216 17072331 ~ 17083543 (-) False si:ch73-347e22.4
XM_043217740.1 mRNA upstream 106216 17072331 ~ 17083543 (-) True si:ch73-347e22.4
unassigned_transcript_2205 other downstream 58375 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 60550 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 62008 16896108 ~ 16897143 (-) True LOC122324113
unassigned_transcript_2200 other downstream 66570 16891692 ~ 16892581 (-) True LOC122324112
TU197682 other downstream 68285 16890153 ~ 16890866 (-) False LOC122324114
TU197783 other upstream 251673 17217788 ~ 17218749 (-) False LOC122323474
TU197841 other upstream 317217 17283332 ~ 17284744 (-) True G133949
TU197840 other upstream 364582 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 647365 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 963574 17929689 ~ 17935436 (-) True s100a10a

Expression Profile