RNA id: XM_043218000.1


Basic Information

Item Value
RNA id XM_043218000.1
length 1887
RNA type mRNA
GC content 0.45
exon number 10
gene id stx12
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3583094 ~ 3590653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGTGAGGAACGGCCCTGAGCTGAAGTAAGATCATTATATGTATTCACCGGAATTAGCAAAACAACTCTCTGACAgcacatCGTTTTCAGGCACGGATACGCTTCCTGCTCTAGTTTCCTCCACCCTTTGTCCCGAGACGCCCGTCGGAGCCAGCTGAACAGCCCGCAGTCATGTCGTACGGACGGACCGAGCAGCGCGCCTCGCCAAAGGACTTCAGCAGCCTGATCCAGACATGCAGCTCCAACATCCAAAAGATCACGCAGAACAcGGCACAAATCAAGAGCTTGGTAAACCAACTGGGAACAAAACAAGACACCAGCGACCTGAGGGAGAGACTTCAGCAGGTGCAGCACTACACAAACCAGCTGGCCAAGGAGACCAACAAACACCTGAAAGACCTgggctcgctctctctccccGCCTCCCTGTCCGAACAGAGACAGCAGAAGATCCAGAAGGACCGGCTGATGAACGATTTCTCCGCCGCTCTCAACAACTTCCAGGCAGTGCAGCGCCGAGCcgcagagaaagagaaggagtcTGTGGCCAGAGCCCGAGCAGGGTCTCGACTCTCGGCTGAAGATGGAGGTCATGAAGAGCAGCTGGTCTCCTTTGATAAtaatgatgatTGGGGTAAGACCACCACTCAGATAGAAGACGTGGCCATAACAGAGGAGGACCTGGAGCTcattaaagaaagagaaaccGCCATTCGACAACTTGAGTCAGACATTTTGGATGTGAATCAGATTTTCAAGGATCTTGCGGTGATGATCCACGATCAGGGTGAAATGATAGATAGCATAGAGGCTAATGTGGAGAGTGCAGAGGTGCATGTGGAAAGAGGAGCTGAGCAGCTCCAGAGAGCAGCTCACTATCAGCAAAAGTCTCGTAAGAAGATGTGCATCCTGGCGGTGGTCCTTGCCTTATTGGTCGGCGTTATCGGCCTTATCATCTGGGCGTCGACAAAGTGAAGATCCTTCCTCTACTCTTCCCCTTTTCCTctcatttctttaatttattttctcgCTCGCAAACCCAGTGCCATCCTCATGGAAAGGGAGGTCCTCAAAGGCTCTCAGCAGCACCTGTAGGTCCGTCTCTGTAGTTTCTGCAGGGTTAGATACAGTATGAAGTGGCTTAAGCGAATGTAACATTCCCTAGACTCTCCCCTCCGGACCTTTAGTTCCTAATGAAGGAGGATGAGCTCATGGATGGGGTGGGGAAAAGTGATATAAGATTTCATTTTGATGCTTGTGATATATTTCTAGCACTAACACTACtttacatttcttaataaaGTCAGGTTATTTCATTGAATTGCAATAAGATGTAAAAATTCAATTTTGATgacattttgttctctttttacATCTTACTGTAATGTAAATTTGGCTTTAGACGTTTTGTACATTGTACATTTCAACTGTTTCAGATTTGTCAAGTCACTCCAAAGGTTAACAGCAAACTGCTTAGATGAGCTGCAGAATTAACCGTGCGTTAGACACCATGTCATTGATACCGTAAACCAGTAGACTAGTAGAACTGCAAATATGAAGCAGCAATGATACCTAAAGCTCAAACATTTCTCAACTTGAGTTTCAATACTGTTACTGGTGTTAACTGACAGGTTTATTATACAGGTCTATTATATGGTGGTCATATAGCTGTAAATGTGTTGTATAAGAACTCGTAATCAATACTATGGCTGAAATCGATTTGTATATTACAACATTAAAAGTCTGCACAGTACgttaaaatgatgtaaaaagaTTTGCACCCATACTTTTAGAACATGCAAAAATTATtgtccttttttcctttttaaaaattgatttatatGACTTCTATGAGTACGTGAGTAAAGAAATGTGTCTTAATCGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 6960 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 41756 3465239 ~ 3541394 (+) True G130150
TU192360 lncRNA downstream 307408 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 339560 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 354742 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 560024 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 585615 4176268 ~ 4199257 (+) True G130338
XM_043216957.1 mRNA upstream 760 3577978 ~ 3582390 (+) True trnau1apa
XM_043216958.1 mRNA upstream 760 3577978 ~ 3582390 (+) False trnau1apa
XM_043218084.1 mRNA upstream 6957 3572262 ~ 3576193 (+) True sh3bgrl3
XM_043218501.1 mRNA upstream 12166 3567014 ~ 3570984 (+) True paqr7a
XM_043218369.1 mRNA upstream 74439 3504109 ~ 3508711 (+) True nr0b2b
XM_043218446.1 mRNA downstream 26488 3617141 ~ 3622533 (+) False ccn2b
XM_043218445.1 mRNA downstream 26490 3617143 ~ 3622533 (+) True ccn2b
XM_043217650.1 mRNA downstream 33122 3623775 ~ 3679373 (+) False epb41a
XM_043217641.1 mRNA downstream 36471 3627124 ~ 3679373 (+) False epb41a
XM_043217651.1 mRNA downstream 40418 3631071 ~ 3679373 (+) True epb41a
TU192043 other upstream 489436 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 604734 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 689658 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 796802 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 1252874 2330141 ~ 2330276 (+) True LOC122324256
TU192216 other downstream 169214 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 654115 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 803932 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 869262 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 869262 4459915 ~ 4464590 (+) False znf706

Expression Profile