RNA id: XM_043218017.1


Basic Information

Item Value
RNA id XM_043218017.1
length 3095
RNA type mRNA
GC content 0.47
exon number 11
gene id txlna
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7777473 ~ 7784225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCAATCATCTTCGAGCGTTTCCATGGCATTTCCTGTGTCAGTTGGAAGCAGCAGTGGGAAGGGTAAAGAGTGGTGGTGACAAACATCAGAAGTGGTTTCTTGGAGCAAACTAAAACACTGTATTTGTTTATAGGTCAACAATGCAGAGGAGTGAGATGGAGGATCCAGTAGCTGATAGCAGTGCAGATGATACAGAGGAGAGCACAGCTGCATCTGAGATGAACAACAGCCCTAAAGAAGCCGTAACACAGACGGATGGCACACCAACCAATTCTCAGGCAGAGGAAGGCTTGGCTGGAGCGAGTTCTGCTTCCCGTGACATGGCGGAGGAACTGAGCAGACAGCTGGAAGACATCCTCAGCTCCTATTGTCATGAGGACGGCGAGGATGCGGCGGTGACCAACGGCCAGCCCGACGGTGTGGAAGTGAACGGGCTGTGTGAGAAGGAGGACGGCAAGCAGGAGGACGCCAAACTGAATGGCAATGGATGCACTGAGAAGGAGCAGAAAAAGCTGCAGGACAAGAAGAAAGTCAAGGGACTGGgcAAGGAGATCACCCTTCTCATGCAGACCCTCAACACATTGAGCACTCCAGAGGAGAAGCTTGGTGGTCTCTGTAAGAAGTACGCCGAGCTGCTAGAGGAGCACCGCAATGCTCAGAAACAAATGAGGGTTCTGCAGAAGAAGCAGACGCAGTTGATCCAGGAGAAGGACCACTTGAGAAACGAGCACAGCAAAGCCATCCTGGCACGCAGCAAGCTGGAGAGCCTCTGTCGAGAACTGCAGAGACACAACCGCACACTTAAGGAGGATGGTGTGCAGCGTGCCCGGTTGGAGGAGGAGAAAAGGAAGGAAGTGACCTCACATTTCCAGGTGACTCTGAACGACATCCAAGTTCAAATGGAGCAGCACAACGAGCGTAATGCAAACCTAAGGCAGGAGAACATGGAGCTGGCTGACAAACTGAAGAAGCTTATTGAGCAGTATGAGCTCAGAGAGGAGCATATTGACAAGGTGTTCAAGCAGAAAGATCTGCAGCAACAGCTGGTAGATGCGAAGCTTCATCAGGCACAGGCTCTGCTCAAGGAATCAGAGGATAGGCATCAGAAGGAGAAAGAATTTctcctGAAAGAGGCTGCCGAATCCCAGAGGATGTATGAGCTTATGAAACAGCAGGAAGTCCATCTGAAACAGCAGCTGTCATTGTACACAGAAAAGTTTGAAGAGTTTCAAAACACACTTTCCAAAAGCAACGAGGTGTTCACAACTTTCAAGCAAGAGATGGAAAAGATGACAAAGAAGATTAAGAAGCTGGAGAAGGAAACAACCATGTACAGATCACGATGGGAAAGTAGTAACAAAGCCCTGCTGGAAATGGCAGAAGAGAAAACTCATCGAGACAAGGATTTCGAAAGCCTGCAGGTGAAGGTGCAGCGACTGGAAAAGCTCTGTCGTGCATTACAGATAGAACGCAACGAGCTGAGCAAGAAAGTTCAGGGGGTCTCCACGGGCGTTGAGAGTAAGCCAGAAACGGAGACGGGGTCCCCATCAGAAGCCACAGACTCGGAGGAGGGCAGCCCTGTCCATCAGAACGCCGCAGAGACTCCGCAAAGCGCTTGCAGCCCGGCGTGCCACTGCGCTCCCGATTCAGAGGCCGAGACTCACAGAGAGGTTTGCTCGGCCCAGGATTGAGTCTCGCTGCTTGTGGGCGGCCAGGACACACACAATCCTTCCCGCCTCTACCAGACCCCCGACCCTCCATCGGCAGTCAGCGTCTGTTGTTTTCCACAGCGGAACCGCCGACTCGGCTGCTCCCGAGGGGTTTCATTGTGTCAGGGAAGATTGTGCCTTCAACATGATTCCTATGCTGCGTTTCTAATCTTTGGTTTTTATGTGGCTCGCTTGATTCCTCCCTATCTCCCCCGGAAGACTCCATATTTGCATTTAGAGGGGCATGGATGTTGCTGCTGTGTCGGAATGCTCAGTGTTTGTCCACTAAATGCTTGCGTCTTTTCGGTTTGGCTGAAATGGTGAAACGGCAATTGTGATGCGATTCTATTTcattaagtgtttttgtttcatttctcgCCTTAAGTTGTTGTATCGGGTTAAATCTGCTTGTACACTTCCCAGCCACCCTCTTCCTTTCGGGTTTAAACCCCACAGATCATAGTTTGCACCAAACAAAGAATGTACGATTGGTTATTCGTCTTCACTACTCGGAGTTTAGAATTGTAGATGTAGAGCTAAGACTAACATTTGAGTTTCTTTTATGCTTTTGCACAACACTTGAATTTTGTCACGCGTATCTTTTAACTCAAGTTTACACCACCTTTAAACACCACTAGcttctttaatttaatatatccAGCGTTGTAGATGCACTCCTTTACCATTCCATTAACGTCTAATTAGGAATGTGCACTTAAACGGTGTCACGACAGATGACATCTCATTCGGTGTGTGATTTCAGTTTGGACGGGTTTTCACGTTCAGTTGCTTCAGATACTGACTTTGTGGCTTACTAAATGTTTAACATATTCAAAACGTAAAAGAAGAAAAGCCCAGTTACGTCAGATTAAACGGGAAGATTCAAGGACACTCTATGCAATTCTAGCTCTGTTCATGTCATCTCGGTGTTGAGCTTGTGAGCAAAGAACTGACAGGCTGAGAAATGAATGTACGCTCCACACAAAGTGACTTAGTTTTGAGTAAATTTCAGCactcttgaattttttttttttcgttcccTCCAATACTTTTAAGAATTTGTAGTTTTTGTGCCCCTTCAGTAGCCTTGCTGAGTGGAGCACGAAAGTATCGATAAAGTGTGGAGCTTACTGTGCATCGAGTCATGGCCATGCAATCCCCTTCATATTTCATTCCAGTCGGTCAAGGTTTCTGTACAGGTTTAGATTTCGTTACAAGACGTTTGTGAACTGGTATGTGtgtgaaaattgttttattttatttgctggTCATTCGAATTTGACATTCCCATCATATAAGGAGGTACCAAAGatctttgttcatttgtttcccGCCACATCCTGTAATCATTTATTTGCGAATAAAAATactaagaaaattaaaa

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193980 lncRNA downstream 187326 7567948 ~ 7590147 (-) True G131363
TU193978 lncRNA downstream 325557 7450993 ~ 7451916 (-) False LOC122323248
TU193897 lncRNA downstream 421773 7354144 ~ 7355700 (-) True G131318
TU193896 lncRNA downstream 422004 7354144 ~ 7355469 (-) False G131318
TU193873 lncRNA downstream 514863 7260295 ~ 7262610 (-) True G131305
TU194062 lncRNA upstream 165564 7949789 ~ 7950001 (-) True G131411
TU194064 lncRNA upstream 203295 7987520 ~ 7988325 (-) True G131413
XR_006247019.1 lncRNA upstream 211862 7996087 ~ 7997257 (-) True LOC122323519
TU194130 lncRNA upstream 211867 7996092 ~ 7996394 (-) False LOC122323519
XR_006247114.1 lncRNA upstream 262051 8046276 ~ 8046879 (-) True LOC122324217
XM_043217931.1 mRNA downstream 359 7773965 ~ 7777114 (-) True eif3i
XM_043218381.1 mRNA downstream 146717 7611987 ~ 7630756 (-) False fndc5b
XM_043218380.1 mRNA downstream 146718 7611987 ~ 7630755 (-) True fndc5b
XM_043216940.1 mRNA downstream 196239 7576180 ~ 7581234 (-) True LOC122323247
XM_043216942.1 mRNA downstream 201969 7568543 ~ 7575504 (-) True e2f3
XM_043218134.1 mRNA upstream 2661 7786886 ~ 7801721 (-) True kpna6
XM_043217747.1 mRNA upstream 338320 8122545 ~ 8129258 (-) False khdrbs1b
XM_043217224.1 mRNA upstream 361411 8145636 ~ 8147485 (-) True agr2
XM_043218401.1 mRNA upstream 366734 8150959 ~ 8162163 (-) False ppp1r10
XM_043218402.1 mRNA upstream 366734 8150959 ~ 8162163 (-) True ppp1r10
TU193992 other downstream 172330 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 379527 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 417362 7356621 ~ 7360111 (-) True LOC122323893
XR_006247131.1 other downstream 1073536 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 1074084 6703323 ~ 6703389 (-) True LOC122324260
XR_006247052.1 other upstream 334724 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 337287 8121512 ~ 8129258 (-) False khdrbs1b
TU194205 other upstream 503069 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 505363 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 943034 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1

Expression Profile