RNA id: XM_043218064.1


Basic Information

Item Value
RNA id XM_043218064.1
length 2970
RNA type mRNA
GC content 0.41
exon number 13
gene id ptdss1b
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14377025 ~ 14386392 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTACTCGACTTCAGCGAAGTCCTGTCAGAAAAACCCGGCGCTGGAGGAGTGAAGTTTCGTCTGGACCCTTTGTCAGTTTGGATGAGACCAACCATGGCGCCCAGTCAGGGATCCAGGATGCTCAGTAAAGATGATGCGAATTATAAACTTCACTTTCGGATGATAAACGAGCAACAAGTGGAGGATATCACCATCGATTTCTTCTACAAACCGCACACCATTACTTTACTGACGTCCACTGTCGTCAGTATAATGTACTTTGCGTTTACGAGGGATGATGGTGATTCTGATAATAACCTTCGTGTGGGTCTGCTGCTGGTtggctctttctttcttgtcaTCAGCGTTCTTGCATTCCCCAACGgTCCTTTCACAAGACCGCATCCTGCTATATGGCGCATGGTTTTTGGTCTCAGTGTTCtttacttcctgttcctggtGTTCCTCATCTTCCTCAACTGGAATCAGGTGAAGACGCTGTTGTATTGGCTCGACCCCAATCTGCGTTATGCTACACGAGAAGCGGATGTCATGGAGTATGCAGTAAACTGTCACGTGATCACATGGGAACGCATCCTGAGTCACTTTGACATTTTTGcctttggtcatttttgggGCTGGGCAATGAAAGCTCTACTCATCCGAAGCTACGGCCTCTGCTGGTCTATTAGCATCACATGGGAGCTCACAGagTTGTTCTTCATGCACCTCCTGCCAAACTTTGCAGAGTGCTGGTGGGACCAAGTCATTCTTGACATCCTGTTGTGCAACGGAGGGGGCATTTGGCTTGGCATGACCGTGTGTCGCTTTTTAGAGATGCGTACCTATCACTGGGCCAGTATCAAggatATCCACACAACCACAGGCAAGCTGAAACGGGCTGCTTTGCAGTTCACTCCGGCCAGCTGGACGTATGTGCGCTGGTTTGACCCCAAATCCTCTTTTCAGAGGGTGGCTGGAATCTACCTCTTCATGATAGTATGGCAGCTCACAGAATTGAACACGTTTTTCCTGAAGCATATCTTCGTATTCCAGGCCTCTCATCCTCTCAGCTGGTGCCGGATCCTCTTCATTGGGATCATCACTGCCCCCACAGTGCGGCAATACTACGCATATCTAACAGACACCCAGTGCAAAAGAGTTGGAACACAGTGTTGGGTGTTTGGggCCATTGCTTTCCTGGAGGCCCTGGCTTGTATCAAATTCGGACAAGACTTGTtctctaaaacacaggttctCTATGTTGTCCTTTGGCTTTTATGTTTGGCTTTCATTACTTTTCTCTGTCTATATGGTATGGTTTGGTACGAGCAGAATTATGGAAAGAGGCTTAAGTACATTGCGGATTGTGACGACAGCATCATTACTGACATTCCTGAAACCGCCAAAGcAGAGAGAAACTCCAGCAGTAATTCCACTTCATCACGGAGAAGAAAAGGAGGatctggaaaaaacaaaacaatcaatgGAACAAGCGGCAAGAAGTGACCACCGCTAGAGACCGATGATCTCTCAATGGGCCAAAAGGGGTGAAAGAAGGAATCTGTGGTAAACGGTTAAAGAGAGGTAAACGGTTAGCTGGGTGACAGTGTGCAGACACAAGAACGGGACGCGTTCCAAACCACAAGCCTCTGTCGTACACtagttgtcatttttatagcaCTTGGAAGGAAACAATAATTTGTAGTATGCCGGGATTCTGGGAAATTACACAATGCGCACTTTCCAGTGGCACTGATGTGGTTTTTATATTGAGGAAGTTATCTGAGCCAGTGAATATTTTGTGATGAGCTTCCATGCTACCAGGCTtcaatttttgtaaaattatgggAGCGTTATTCAACTTCAGTATTGTTAATGCTGACCAAGCCTGCTCTTAAATGTTGCACATAGATCTCCGCTTGACCTGTAATCAGCGATTGTTTCGCTGACACATACCTATGCGTCGATCAGGGTAAGACATTTTATGCAACATTTCATTGTGAACATAAAAGCAAGCTCCGCGTTTGTGAGAAACCTTTAAGCACTTGTTTTAATGCACTATGATCTTTGCACAAATGTTCTATTATCACAACCGTTTTCATTCTTATACTTgctcttttaaatttaaaactgcAGAGTGGTTAAAGAAGTGGCTGCTTATGACCTTTTTATGAGCTGTtgatttacttaaatgtaatatgATTCAGCTTTTTTTGGCAACATGTAAAGGTGGTTTAGAAATGGTGACATCATCTGTATGatgtgtcttttgtttttgtacttctgttgtttttctttgtacGTTAACTttatacctgtgtgtgtgtgtgggcatgtGCATACATGATTTTAGATCaataatattttctgtgtgAGGCCTTTAAATTACTATGCATTTctatgtgcaattttttttgaaattgtaatttttgcagAACCTACATTCAGgattttgtgctgtttttgaaggcagtgatatttttttcccatgGGTTATTAATACTGAATAGTAGCATATGCATCTATTAAGGTACTATcacattttgtcttatttaattgtttttttatattctgtttttcaTGGACCAAATTGTTGAGCAATACCAAAGCTCTTAGttatacatatttttcccttggaaaaaaaactccaaaacttaAAATAGCTGTTAAGATTTCTAGTCATGAATTTTGTATGGAGCTGCAGTTCTGAAAGAACAAAGAGAATGCATAAAATGTGATGTCAAACTTGAATCTTCCACAGCAGTgttgtaacatttaattatttcttatgatttaatataataatcagGAGCAATGAGGTGTGACCAGATTTTTATCAATGTATGAATTAATGATATAAATTCTCACAGATGTGAACACCCCTTAACGGGATCTTCTTTTCACTTTCTGAATACACTTATACTGCATTGTTCattgaaaatgctaaataaaaaataaattgtactaACTTTAGTAATTATAGTAGAA

Function

GO: NA

KEGG:

id description
K08729 PTDSS1; phosphatidylserine synthase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247102.1 lncRNA downstream 104307 14268267 ~ 14272718 (-) True LOC122324095
TU196443 lncRNA downstream 104339 14269221 ~ 14272686 (-) False LOC122324095
TU196444 lncRNA downstream 105504 14269221 ~ 14271521 (-) False LOC122324095
TU196248 lncRNA downstream 815566 13561128 ~ 13561459 (-) True G132852
TU196240 lncRNA downstream 827274 13548740 ~ 13549751 (-) True G132846
TU196470 lncRNA upstream 17126 14403518 ~ 14428822 (-) True G133016
TU196648 lncRNA upstream 449060 14835452 ~ 14835861 (-) True G133144
TU196647 lncRNA upstream 450068 14836460 ~ 14837953 (-) True G133143
TU196707 lncRNA upstream 804413 15190805 ~ 15277403 (-) True G133190
TU196750 lncRNA upstream 997455 15383847 ~ 15384115 (-) True G133226
XM_043217971.1 mRNA downstream 589 14363670 ~ 14376436 (-) False nup153
XM_043217970.1 mRNA downstream 589 14363670 ~ 14376436 (-) True nup153
XM_043216966.1 mRNA downstream 13756 14356731 ~ 14363269 (-) True krit1
XM_043218207.1 mRNA downstream 34716 14290541 ~ 14342309 (-) True eif3hb
XM_043218425.1 mRNA downstream 182284 14097094 ~ 14194741 (-) False trps1
XM_043218279.1 mRNA upstream 42511 14428903 ~ 14431551 (-) True LOC122324080
XM_043217410.1 mRNA upstream 109155 14495547 ~ 14561286 (-) True ext1b
XM_043218202.1 mRNA upstream 192570 14578962 ~ 14641141 (-) True samd12
XM_043218203.1 mRNA upstream 205726 14592118 ~ 14641514 (-) False samd12
XM_043218201.1 mRNA upstream 205726 14592118 ~ 14641224 (-) False samd12
TU196169 other downstream 868572 13507664 ~ 13508453 (-) True G132785
TU196161 other downstream 874782 13501119 ~ 13502243 (-) False G132784
TU196164 other downstream 876564 13498337 ~ 13500461 (-) False G132784
TU196165 other downstream 878935 13494830 ~ 13498090 (-) False G132784
TU196632 other upstream 397796 14784188 ~ 14784423 (-) True G133132
TU196661 other upstream 505035 14891427 ~ 14891896 (-) False zgc:114119
TU196741 other upstream 980042 15366434 ~ 15369736 (-) True G133217
unassigned_transcript_2196 other upstream 998803 15385195 ~ 15385266 (-) True trnap-agg_22
TU196948 other upstream 1258470 15644862 ~ 15648579 (-) True LOC122323308

Expression Profile