RNA id: XM_043218065.1


Basic Information

Item Value
RNA id XM_043218065.1
length 612
RNA type mRNA
GC content 0.44
exon number 4
gene id rpa3
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5716696 ~ 5717681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGAAGCGGCGTCGTCGTGGAATACGTCACTTGCTCTAAGTTTTCCCGCGTCTCCGGCGATAGACAGCTTGTGGATCGTTTCGGGTTTTACTTTTTGTGTATGATTTGTCACAAACCTCCACAATGACAGGCGTTTACGAGTCTCCGAAGCCCAGAATTAACGCGTCGATGCTGGCTCAATACATCGGGCGACCGGTCTGCTTCGTTGGACGCTTGGAAAAGGTGCATCCATCAGGAAAGGCTCTTACTCTGTCAGACGGAGAAGGAAAGTCTGCATCAGTGGAGCTCAATGAACCTCTGGATGAGGAGCTGAGTGGGATTGTGGAGATTATCGGGATGGTGTCGAACAAAGGAGAAATTATGGCTGTTTCGTACACTCAGTATCGAGAGGACAAAATCTCTTTTGatCTGGAGCTGTACAACGAAGGCCTGAAAGTTCTCCATGATTTTCCCCAGTATTACCCGTTTGAGGTGTCATTAAGTGGTTGAACTGCACTTTTTATTCGCCTTTTACAGTTTCTTTATAATTCGATATTTactgtgtttgtaaaaaaaaaaatatgtaaacattgttttgtttttgttacttgGAATAAAACCTTTAAACCCTT

Function

GO: NA

KEGG:

id description
K10740 RPA3; replication factor A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193233 lncRNA upstream 41852 5674295 ~ 5674844 (+) True G130861
TU193228 lncRNA upstream 46164 5659533 ~ 5670532 (+) True G130858
TU193224 lncRNA upstream 84268 5614264 ~ 5632428 (+) True G130855
TU193218 lncRNA upstream 104358 5610988 ~ 5612338 (+) True LOC122324017
XR_006247088.1 lncRNA upstream 104732 5611112 ~ 5611964 (+) False LOC122324017
TU193274 lncRNA downstream 67449 5785130 ~ 5787803 (+) True LOC122323983
TU193265 lncRNA downstream 70885 5788566 ~ 5924971 (+) True G130890
TU193266 lncRNA downstream 70885 5788566 ~ 5924971 (+) False G130890
TU193268 lncRNA downstream 70885 5788566 ~ 5924971 (+) False G130890
TU193281 lncRNA downstream 80830 5798511 ~ 5934717 (+) True G130899
XM_043216990.1 mRNA upstream 102566 5613068 ~ 5614130 (+) True LOC122323266
XM_043218363.1 mRNA upstream 131041 5583505 ~ 5585655 (+) True LOC122324139
XM_043217936.1 mRNA upstream 145425 5569730 ~ 5571271 (+) True LOC122323836
XM_043218491.1 mRNA upstream 183809 5531960 ~ 5532887 (+) True LOC122324215
XM_043217323.1 mRNA upstream 216100 5484940 ~ 5500596 (+) False eya3
XM_043218150.1 mRNA downstream 7687 5725368 ~ 5739185 (+) True col28a1a
XM_043216946.1 mRNA downstream 28149 5745830 ~ 5752917 (+) False LOC122323254
XM_043218135.1 mRNA downstream 67450 5785131 ~ 5787793 (+) False LOC122323983
XM_043217190.1 mRNA downstream 158369 5876050 ~ 5881152 (+) False LOC122323385
XM_043217189.1 mRNA downstream 158373 5876054 ~ 5882974 (+) True LOC122323385
XR_006247105.1 other upstream 131041 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 402518 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 402518 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 537019 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 553297 5162586 ~ 5163399 (+) True G130637
XR_006246984.1 other downstream 28120 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 67449 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 745402 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 802239 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 974293 6691974 ~ 6695456 (+) False ppp1r11

Expression Profile