RNA id: XM_043218073.1


Basic Information

Item Value
RNA id XM_043218073.1
length 1560
RNA type mRNA
GC content 0.44
exon number 8
gene id necap1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17255045 ~ 17259133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGCCTGAGGCATCGCTGACGTCACTGACGCTCCAGTGCTCGTGGAAGCGGCTGGCCCGCAATAACAAATTGGATGAAGACAGAAATATTACTCGCATCCATTGAAATCAGTTCAAGATGGCGTCCGAGGGCGAATACGAGTCGATTCTGTGCGTGAAACCAGATGTAAATGTTTACCGCATCCCGCCGCGGGCGTCGAATCGCGGATACAGGGCGGCTGACTGGAAGCTAGACACTCCTGACTGGACAGGCCGTATGCGCATTACAGCAAAGGGGAAGGTGGCTTATATCAAACTGGAGGACAAAGTCTCAGGTGAGCTGTTTGCTCAAGCTCCAGTAAAGGAATACCCTGGCATTGCAGTGGAGACAGTCAGTGATTCCAGTCGCTATTTTGTTCTCCGAATACAGGATGACAACGGTCGCAGTGCATTCATTGGCGTTGGGTTTGGGGACAGAGGGGATGCCTTTGACTTTAATGTTGCCCTGCAGGATCATTTCAAGTGGGTGAAACAGGAAAACGAAATCAAAAGTTCTCAGGCTGCAGACTCAGGACCCAAACTGGATCTAGGCTTCAAAGAGGGACAGACCATCACACTGAATATCGGgCAAGGTAAAAAGAGGGACAAGCCCCGCCCTCAGAGCTCAGGGGGCTTGGGGCTCCTCCCTCCACCTCCAGGAGGAAAGATAGCTCCTCCTCCTTCGTCCAATCACAACACAGTACAGCCATCAGGGGGAGCAGAAACGGGATGTTTATTAGAACTGGACAGCAGTAACTCTAATACAGTGGTTCAGTCAAACCCCAGCTCTGACCTTTGGGGTGACTTCTCCAGCTCTGCAAGCTCCGTTGCTCCTCCAGCACCACGCCAAGAACCCTCTTCCGGGAACTGGGTCCAGTTCTGAAAAAGTTTTATCCTCCTCCATTCCATCATTGTTCCCATTCCTCCATCAAAACTACTGCAATTAAAAGAAACTGCATAATTGTATGGAAAACTAGAGGCAGGCTGTATGTCATGCTGCTAATCATAGCAGAGCACAGAGGTGAGAAATAGGCTATTGAGAATTCTGTTAGAATCAACCAAATGAAATTATGGAAAAGATTGTATAAAAGAGAGGAACATCCCATGGGTGTTATATGTAAAACTTTATGgtaatgttttgaattattgtTTCAGTATCTTTGCATTTGTCCACAAGGTGTTGGATGTGTCCATTTTGTTGTCATGACCTGTATATGTTCGTCTTAGGTTTCGGAGGATGTGAATATACGTGTttgagtgtttaaaaaaaaaatggcggaGATTTTGTTTGAAAGCGTAGAATTGAATTGAGGCCTGGATATGTTAAGAGCTTAACATCTTGTATATCATAAGAATATATAAAAgctgtacagtataaatattcaaaacaatacTGACCGAAGGCCACAATGTAGAAAATATATGTCCCTCAAACAAAGGGATTATGTCTAGATATCATTACATATCCATATTGTCATTTACTTGACTAACGGAGTCATTTACgtgttaaacaaaaataaaatatacaaaagagCTACAACA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20069 NECAP1_2; adaptin ear-binding coat-associated protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197791 lncRNA downstream 3741 17248684 ~ 17251304 (-) True G133919
TU197779 lncRNA downstream 39933 17214695 ~ 17215112 (-) False LOC122323474
TU197774 lncRNA downstream 86937 17167025 ~ 17168108 (-) True LOC122323277
XR_006246988.1 lncRNA downstream 87943 17164694 ~ 17167102 (-) False LOC122323277
TU197773 lncRNA downstream 90930 17163832 ~ 17164115 (-) True G133902
TU197792 lncRNA upstream 1577 17260710 ~ 17261499 (-) True G133920
TU197789 lncRNA upstream 6531 17265664 ~ 17268048 (-) True G133917
TU197844 lncRNA upstream 28534 17287667 ~ 17289380 (-) True G133951
TU197866 lncRNA upstream 66198 17325331 ~ 17345216 (-) True G133970
TU198250 lncRNA upstream 330863 17589996 ~ 17594324 (-) True G134245
XM_043217163.1 mRNA downstream 27552 17223716 ~ 17227493 (-) True LOC122323367
XM_043217333.1 mRNA downstream 36255 17215051 ~ 17218790 (-) False LOC122323474
XM_043218221.1 mRNA upstream 15584 17274717 ~ 17280868 (-) True rcvrn3
XM_043218353.1 mRNA upstream 225813 17484946 ~ 17492735 (-) True cacng6a
XM_043218352.1 mRNA upstream 225813 17484946 ~ 17492671 (-) False cacng6a
XM_043217216.1 mRNA upstream 267279 17526412 ~ 17534108 (-) False styk1a
XM_043217217.1 mRNA upstream 267279 17526412 ~ 17532705 (-) False styk1a
TU197783 other downstream 36296 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 354269 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 356444 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 357902 16896108 ~ 16897143 (-) True LOC122324113
unassigned_transcript_2200 other downstream 362464 16891692 ~ 16892581 (-) True LOC122324112
TU197841 other upstream 24199 17283332 ~ 17284744 (-) True G133949
TU197840 other upstream 71564 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 354347 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 670556 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 670556 17929689 ~ 17931750 (-) False s100a10a

Expression Profile