RNA id: XM_043218079.1


Basic Information

Item Value
RNA id XM_043218079.1
length 1086
RNA type mRNA
GC content 0.48
exon number 6
gene id pithd1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13525347 ~ 13527918 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCAATCACGTCCCACGTTTAGTATTTGCGTGTTGTCTACTTTCCCACTTCTGCCACCTGTGTAACTGTACGGTTTTAGCTTATGTCACAGGAGTCGCTGCCGGGGCTGTCGTACGTATCTCTCGGGTGAGCTTAGTTGTAGGTGTTTCGGTACTTTTTCGGTTCACGCCATGTCTGGACACGGCCACGGCCACGGCCACGGCGGCGGACACGGCCACGGCTGTTGTGAATGCGATCACGAGCCCGCAGAGCGAGGGGTGGAATATGAGCTCTACAGACGCATCGATATCGAGAAGCTTCAGTGTTTGAATGAGAGCCGAGACGGAGACGGTAAACTGGTGTTCAAGCCTTGGGATCAACGCGCTGACAGGGAAAAGtttgtcGAAAGCGATGCTGACGAAGAGCTTCTGTTCAATATACCGTTTACAGGTAGCGTGAAGCTGAAAGGGATCATTATTTCTGGAGAAGATGATGAGTCACACCCAGCTGAAATGAGACTGTACAAGAACATCCCCCAAATGTCATTCGATGATACAAGCAGAGAGCCAGAGCAAGCGTTTCGTCTAAACAGGGATCCGCTCGCTGAGCTTGAGTATCCAACCAAgaTTGCCAGGTTCTCCAACGTGCAGCACTTATCAATCCACATATCTCGAAACTTTGGGGCAGAATCCACTCGTGTGTATTACATTGGTCTGCGGGGAGAGTACACCAGAGGTCAcatctttttctctctctttcaggctCATAGGCATGAAGTCACAATCTGCAACTACGAAGCAGCAGCCAACCCAGCAGATCACAAAGTGGAGACCATTACACCCCAAACACAGTTCATATCATGACAAATGGGGGAGAGGGAATCTCACGTGTGCTGTGTGAAACTATAAAAGTGTGCATGAGTTTTGATAACGGTGAGACGAAGTGAGAGGGCCTATGCGTTCTTTGACGTATTCGACAGTGATTTCTTCACCAGGGTTTGTTCAGCTGCAATTCTGCTAATGTGCCAATAAACCTTAGGCTATATAAGCGTAATCACTTAATATATGCTTATGTCAAATAAAACGTGTGTGCTTCAACAAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196098 lncRNA upstream 11451 13513022 ~ 13513896 (+) True G132754
TU196099 lncRNA upstream 12376 13511608 ~ 13512971 (+) True G132755
TU195779 lncRNA upstream 188598 13309455 ~ 13336749 (+) True sdc3
TU195751 lncRNA upstream 398730 13125877 ~ 13126617 (+) False G132549
TU196132 lncRNA downstream 27093 13555011 ~ 13556632 (+) False G132773
TU196133 lncRNA downstream 27093 13555011 ~ 13556589 (+) False G132773
TU196134 lncRNA downstream 27093 13555011 ~ 13556679 (+) True G132773
TU196130 lncRNA downstream 27250 13555168 ~ 13556679 (+) False G132773
TU196131 lncRNA downstream 27250 13555168 ~ 13556589 (+) False G132773
XM_043218075.1 mRNA upstream 415 13517125 ~ 13524932 (+) True eloa
XM_043218081.1 mRNA upstream 15868 13507041 ~ 13509479 (+) True rpl11
XM_043217022.1 mRNA upstream 18935 13503313 ~ 13506412 (+) True LOC122323294
XM_043217228.1 mRNA upstream 23149 13498275 ~ 13502198 (+) True LOC122323414
XM_043217227.1 mRNA upstream 27283 13494814 ~ 13498064 (+) True LOC122323413
XM_043218076.1 mRNA downstream 674 13528592 ~ 13534978 (+) True lypla2
XM_043218077.1 mRNA downstream 751 13528669 ~ 13534978 (+) False lypla2
XM_043218154.1 mRNA downstream 8219 13536137 ~ 13554834 (+) True ankib1a
XM_043218155.1 mRNA downstream 8219 13536137 ~ 13554834 (+) False ankib1a
XM_043217667.1 mRNA downstream 99319 13627237 ~ 13638088 (+) True LOC122323661
XR_006247120.1 other upstream 220203 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 2001466 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3596874 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3886386 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3986854 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU196534 other downstream 1259626 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1306719 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1621386 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 1828822 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 1851552 15379470 ~ 15379541 (+) True trnap-agg_21

Expression Profile