RNA id: XM_043218086.1


Basic Information

Item Value
RNA id XM_043218086.1
length 5003
RNA type mRNA
GC content 0.44
exon number 18
gene id pogza
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13090763 ~ 13099037 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATCTTGGAATTAGTGAAAGCAAAGTCAACCCTATTACGAAAAGAAAACGACTGTGCTGAAACTATTAATTATGGCGCGAGACTAGCATGAACTGAACCCACGTTTTCCTTTCGATGATCGACTCGTGAGTTTGTGTCGTTCGGGTTGTACAGGGTTAGGGTGGTAATGCTGGATTATTTGCCTACACCATTTAGCTGGCTAAGCTAGGGGCTGTACATAATGTTTAGTGGAGATAAAACCCGCCGTTATAAAACAAGCAAATCAATGTGGCAGATAGCATGACCAATGATCAAAAAACTGGAAAATATGTTTgctataatttacagtaaattgtTTTGATAAAAGGGGATTATTGCATTAACGTTTATCACTGGAAGCGATACTCCATTACCTTTTCATATCATTATATGCGTGTACTGTAAAAATGAGTCTTCGCTAGCGTGAACATTTActgctttatttgcttttttaattaaataatgaataatcgCGATCAACCCTGCTTTCTCGCAAATATCGCAACCAATCAGCGTGCAGGGAAACGCTCGTGGAAGTgacgtttttaaatgtttcgCCCACCACCGCGAGCAAACAGGGGGAAAACGTCTGCAGAACAGGGATCATTGTTTTTCCATCATGGCAAAGCCCGCGAAGAATCAGAGGAAATAACGCATTGTACATTTGCATAATATCGTGCGCGTATGCAAAACCGTGCACGAGAAACATGGCAGAATCTGACCTTTACATGCAATGTGATGAAGATGATCTAGAGCCATGCCAGAGTTTTGCTGACAACAGGGAGCAGATATATAACGAAGAATCAAGTGGCAATAGTGCACTGATACCAATACAGTCTGATGGCACCTCTGAAGCAACATCGGCTACTGCTGACCTCACAAATCAAGCTGTGCCTGTGATGTCTGCTTCTGCTGGTACGTTGCTGCCCAGTGCTACCCAACCTGCTGGAGTTGCAGGTGGCCAAACTATCTTCATCAGGGCACAGCCTAATCCAGGACAGTCTTTGGGAGGCTCAATGAGTTTGGGAACATCACTTGGTTACTTTTTGAATGGACAGCCGATTAGTTTTCTGACGTCTGCTCAGACACCACAGTTAATCGCTCCTCGGATGGTTACCCCAGCGAGTTCAGCACGGCAAGCAACCCCTGGAAAAATCTCTACATTGCAGATCCCAGTCACTTTGACCATCAACAACCCCTCAAATTTACAAAGCATCACTTCAACAGCCCCTGGAGTGACCAATCTAAACATGACACCCTCCAACATCCTACCAGCCACAAACACAGgaacaacaataaaagtaataaagttAACAAAGTTAACTGGAGCACCTGCAGCCGCCGGTCAAGGAGTGAGTTCGTTTATGCAGCCAAACAAAGCAGTCACCATCCAAAGCAATATAACAAACAGAGCTCCAGCCCCTCTTCTGTCTGGTGGTCTTTTTCAGGTCTCAAAACCTGCTCCTGCCGCAGCATCTAACGcattgAAGAGAGGCTTCAATTCATCAAAATTCTGTGTTCGCTGTAAAGCCTTTTATCAAAGATTTCAGTCTCTCCGTGGATACTACTGTCAATGCAATCAAGAACTTATTAAAAGCATCCGGGACCTGACAGCCCAAGCTAGAAAAAGGATCAAGCGCCCGAGTGACAAAAcccactcaaacccctccacatCTAAAACTCCAGTTTCCTTCTCCGCATCTTCAGAAACATCTCTCAAACACGTCACCACTTCTGAAATACCCGAAGGAGCGCCTAATCCTCGCTCTGGGGATTTTGATGAGCAGGGCAGAATGATCATGTTAGTTGAAGACTTCTTCTATGGGCAGCACCCTGGCCAGCCTGCACCAGTAAGACCCAATGCAGAGCCTGTCACGATGAAATGCCAACTTTGTGACAAGAAAGTGAAGGGCAACATCAAGCTGATGAACCACACAAAACATCACATGGAGTTGGAGCGACAAACAGGGGAAGTAGACTTTCATACTATGTGCCAGCACTGCTACAGAAACTTCTCAACACCTTTCCGGCTGCAGTGCCATGTTGAGACGGTCCATAACAAAGCAGAGTCCTCAAAAGTGTGCAAGATCTGTGAGTGGTCCTTTGAGAACGAACCTCTCTTTTTGAACCACATGAAACATGCGCACAAGCCTGGCGAGATGCCCTACATGTGTCAGGTGTGCGAGTTCCGCTCCTCCTTTTACGAAGATGTCATAAGCCACTTTGCAGAGAAGCACAAGAACACCTGCATCTTGATGTGTCCCTTTTGCTTAAAAGTGTTTAGGTCTTGCGGCGGTTTCCAAATGCACTTTACTAGACATCAGAAAAAAGCAGCAAGGCACTGTGACAGATGCAGACTTCAGTTCATCCATGAGAAGGACGAGTGGCAACACAGACAAAAGTTTCACAGGACCTTTGTCAAGCCCAAGCAATTGGAGGGTCTTGTGCCTGGCACTAGgGTAACTATCCGAGCTTATGCTGACCGTACCGACAACAGAGATCATTTAGTAGCACCTCCACTGAAGACTCCCATAAACACAACATCAACATTTGTAGCATCTCAAAATGTCACCAATAAAGTTATTCCCACAAAGAAAAAACCAGTGGAAAGCATGGTGGAGCTAATGGTCAAGTTTCAGAGTCAGTGCAAGccaacagaaaaacacttctgcATGGAATGCAACTATGACATTCCATATTTTTCCAACCATTTTCCCACCTATGTGAGCTGTTCCCTCTGCCGATACAACACCTGCTGTTCCAGAGCATATGCCAATCACATGATCAGTGTACACGTTCCtcgcaaaaacacaaaaaaatatattacccTATACAAACCCTGCCCAAAGAAGGGGCGGTTAAGCTGTACCACATGTAGATACAAAACTCAGGTTGGAGATCTGATGGCCAAACATCTTGCTGATTATCCTAACCATCAATCAAGCCATTGCACCATACGGGAAGGATTTTCACGTGGCTATAAAAGATTTGTCTTCATTCCAACGGACCTTCTTCGAGGGGGCAGAAGGCTTAACAACAGGGTCTTTTTGCCTTTGCAAGTGAAGCAAGTGGACGGGAGCTCATTTCCTCTCTCCTCCAACCCCCTTCCTCGACCCAGCTACACAATAACGCTCCCTGCTAGCCCTGCTTTCACACCATCACTTCCCATTCTGATTCAGTCTGTTGAACCAAGTTCTGTTCCAGACAAAATATGCCAAGCCAATCCAAGTGCTTTGAAGCTAACTTTGAATGGAGGGCTTTCTGAAGTTGCTACAAAACATGCACCGGAAAAATTGTTTACCGTGGCACAGTTGAAAGTCGTACTGTATGCCCTCTGCTGCGGGTTCCCCCAGGCCGCTAATCACTTTGACACTCCACCAGAAGAAGTCCAGTCATTGCTTTTGAAACGACAGCATCAGATTGATCCCTCGGGAAGCCAACAAGGTTTGTCTCCACAGGTAGCTGATAGCTTAATCGAATGGGTGCTATGCCAACGTGAGCAACAACTGCCTATTGATGAATCTAACCTGTTCGGGTTCATAAGCAGTCATGGTGTGAAAGATATCTCCTACAACTCAATGGTTGATTTCTTGCTTTGCCACGATCTGGGCTTGCAGGCGTTTGCCACATCCAGCAAGTCGCTACCGTATAAATCCCAGGAGCTCGAGAACTCCTTCAGCAGCTTTCTAAAAAAGCAGGTGACATCAAAATCCTTTGGGTTGTCTTCTGTTGGCGCCATGGATGAGCTTTCCATCTTTGTAGATACGAAGCAGTTGGATGAAGCCTCTGCAGATTTGTCGTCCATGTTGTCTGCTTTTACATTAATGGGCACCACAGATCCACTCATAGATGTTGTGTTCACAGCCCTGGCTGATGGGACTACATTACCTACCATGGTTTTCCTCAGAGGTGAACCTCTCAAGGAACAAGCAAGTTCATTGCCGGACTTCTTTATTCTGGAGGCTAGACCAGAAGGGTTCACAGATGAAGAAAGACTTCAGCTTTGGTTGGACAAAGTGTGGTGTCGGCACATCAACCCTAGTTTTGGAGGCAAAGGATTGCTGATAATGGACACATACAAAGGCCACATGTCCAATGAATTCTTGGTGACACTCAACAGTGTTAATACTCTTCCAGGCCTGATTCCACGCAGTTGCTCTCGCCGTCTACAGCCCCTTGAAGCCTGTATGGGGCCAGTATTACGAGAGTTTATGCAGACTCGCTGGAGCGAGCATGTGACAAAAGCACCACGAGAACTGGTTGGAGCCAAATCAGCTGACCTTGCCCTTTTGCTGTCTCGCTGGCTTATTGAGGTTCTGGAGGTCCTTATAGCAGAGCCCAAACTTCTTTTTCGCTCTTTTGATCAGGTTTTGAGCACAAACCCAGAGGAACCCTCTGAGCTGGTGCAAAGTTTTACTGAAGCTCTGCTTGTCAATAAATTGCAAGGAGACAAAGTTGAGCAGAAAGCTGAGACTTCTAGTATAATTTCTGCAGAATCTTTGTCCTCTCCACAATCAAGCATGCTTGCATTAAGAAAACTCTTTGAGAAGGACAGCGATGTGGAATCTTTCCATGGGTTTGAGGAATCAGAAATTTTAGATCATTTAAGTCAAATGTAATAGCATTGTCGGCTTTACAGGtcaagaacatttttgaaattaCATGAACTCTTCAAGTGAAGTATCTATGAAAATGCAGGTTATTGCTAgcatgtgtaaatatttgttgCATTAATGGGTGCTAAAGATTCCTAGTGTGAAGTCTGCATCATCATGGCTTTTATTGTTCATTGAAGTACAAATGTGCAACGCGTTACATTTTGTGGTTTAGTTTCACTGTGCCTTTTCATCAGGTTTGGTCCATTATCATaatgtgcataaatgtaaatagacatgatttgaaataattacCTACTGTATTTAGGGTTATACTGTAACATACTTGAttacataataaacacttttaggTATGTAATTAAGAAGTG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195692 lncRNA upstream 64737 13021437 ~ 13026026 (+) False jtb
TU195654 lncRNA upstream 225168 12786644 ~ 12865595 (+) True G132498
XR_006247014.1 lncRNA upstream 256238 12831641 ~ 12834525 (+) True LOC122323456
TU195612 lncRNA upstream 422209 12667293 ~ 12668554 (+) True G132472
TU195568 lncRNA upstream 533561 12556964 ~ 12557202 (+) True G132448
TU195721 lncRNA downstream 2912 13101949 ~ 13102925 (+) True G132541
TU195730 lncRNA downstream 19679 13118716 ~ 13123966 (+) False G132547
TU195734 lncRNA downstream 19679 13118716 ~ 13123966 (+) False G132547
TU195738 lncRNA downstream 19679 13118716 ~ 13123966 (+) False G132547
TU195747 lncRNA downstream 19679 13118716 ~ 13123966 (+) False G132547
XM_043217752.1 mRNA upstream 31453 13053757 ~ 13059310 (+) False anp32e
XM_043217751.1 mRNA upstream 31453 13053758 ~ 13059310 (+) True anp32e
XM_043218294.1 mRNA upstream 64743 13021417 ~ 13026020 (+) True jtb
XM_043218466.1 mRNA upstream 69714 12980075 ~ 13021049 (+) False LOC122324201
XM_043218465.1 mRNA upstream 69714 12980076 ~ 13021049 (+) True LOC122324201
XM_043217983.1 mRNA downstream 5644 13104681 ~ 13114081 (+) True si:dkey-166k12.1
XM_043218328.1 mRNA downstream 40224 13139261 ~ 13142966 (+) True LOC122324110
XM_043218109.1 mRNA downstream 57227 13156264 ~ 13167433 (+) True fbxl2
XM_043218520.1 mRNA downstream 69426 13168463 ~ 13209156 (+) True clasp2
XM_043218536.1 mRNA downstream 69426 13168463 ~ 13209156 (+) False clasp2
TU195256 other upstream 1566882 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3162290 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3451802 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3552270 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3926691 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 205969 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 1688507 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1735600 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2050267 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2257703 15356740 ~ 15361845 (+) True anxa14

Expression Profile