RNA id: XM_043218088.1


Basic Information

Item Value
RNA id XM_043218088.1
length 1534
RNA type mRNA
GC content 0.43
exon number 7
gene id zgc:153441
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13086560 ~ 13089430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCTTGACGGTGGCCGTGCAGATTTTTGTAAGCAAAGAAAAGAATCACTGTacgacagaaaataaaatgaaagcagaGCTGACAGCACATCACAGCAGATGACATGTATCTCTTTATTCAAGTAACTCAACTGTGGGAGGAGCTGAAGTCAAATCGTCTCGCCAAATACGGCACAGTAACTGCGGTCACAGCTATTAGTTTGGTTCTGCTGAGAAAATGGATTGCAGGTGGAGTTTGCTGCTGTCGTGTACGACTGGATGGGAAGACAGTCATCATTACTGGTGCCAACACTGGCATTGGAAAAGAGACGGCGCGTGACTTGGCCATGAGAGGGGCTCGGGTTGTGATGGCTTGTCGAGATCTGTCAAAAGCAGAAAAGGCTGCTACAGAGATTCGCAGATTTACAGGAAATGGAAACATAGTGGTTCGTCACTTAAACCTCTCATCTCTGCTCTCCGTGCGCCAGTTTGTGAATGAATTCACTGCCACTGAGGAACGGCTGGATATACTTATTAACAATGCTGGAGTGATGATGTGCCCTAAAAGCCTTACAGAGGATGGCTATGAAACCCAGTTTGCTGTCAATCATTTGGGCCATTTCCTCCTGACTGTCCTGCTCCTGGACGTGCTGAAGAAGTCTAGTCCTAGTCGAATTATTAACGTATCCAGTATTGCTCACAAAGGAGGTAAGATCCACTTTGATGACCTTAACTTCAACAAAGCGCCGTACGATTCCTTAGTCAGTTACAGGCAGAGCAAACTTGCCAACCTGCTGTTTACTCGAGAATTAGCGCGGAGGATTAAAGAGTCTGGTGTATCAGTGTACTCTCTTCACCCTGGAGTAATCCGCACTGAACTGGGACGTTACGTGCAGACTCGCCACCCACTGCTCAGCGCTCTGCTGTCTTTTCCTGCTTTCTTACTGATGAAAACTCCCAGTCAAGGAGCCCAGACTTCTGTTTACTGTGCAGTTGCTGAAGGGCTGGAGTCTCACAGTGGCTGCTATTTCAGCGATTGTAAACTGAAGGAACCCGCTCCTGAAGGTAAAGATGATCTCGCTGCCCTGCGATTGTGGCAGATAAGTGCAAAACTCGTCGGCTACAACGAAGAGAACTGACAAGCAAGCTCTATTCATAATACCAAATGCCTATATAGGAATGCTTTGAATGCAGCTATCAACACACAGATCATCTTTTCCAtctttgctgattttttttaaaaaagcaaaactttatttaattgaatttatgaTTATTGATGGTTTAATCTAGAATGTTTTTGTCTGGATTCGTACTGTAGTACTGTGTTGCCCACCTGCCCATGACAGCtgatgtaattttacattttaaatgttttgaaatctcATTTAATgagtaataaatgtttcattaaggAATATCTTacttaagtaaaataaaagacactAAAATGTTGTGATGAATCGTTTTTCTGTGTCGaatctttcaaataaattagtTCACGGCAATAAAGGACTTACTGAAGGGATATTTTAATGCTGGTAATGTATAAGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11161 RDH13; retinol dehydrogenase 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195948 lncRNA downstream 27250 13054785 ~ 13059310 (-) True G132665
TU195950 lncRNA downstream 27250 13054785 ~ 13059310 (-) False G132665
TU195951 lncRNA downstream 27250 13054785 ~ 13059310 (-) False G132665
TU195946 lncRNA downstream 39937 13046373 ~ 13046623 (-) True G132664
TU195944 lncRNA downstream 54434 13031837 ~ 13032126 (-) True G132662
TU195961 lncRNA upstream 15449 13104879 ~ 13105591 (-) True G132674
TU195962 lncRNA upstream 17483 13106913 ~ 13107133 (-) True G132675
TU195981 lncRNA upstream 53873 13143303 ~ 13143621 (-) True G132682
TU196024 lncRNA upstream 149259 13238689 ~ 13328384 (-) True G132709
TU196047 lncRNA upstream 165406 13254836 ~ 13256019 (-) True G132726
XM_043218145.1 mRNA downstream 543 13080049 ~ 13086017 (-) True vps45
XM_043218146.1 mRNA downstream 9163 13066508 ~ 13077397 (-) True plekho1a
XM_043217008.1 mRNA downstream 42128 13034497 ~ 13044432 (-) True si:ch211-191i18.2
XM_043218297.1 mRNA downstream 57621 13028004 ~ 13028939 (-) False cart4
XM_043218295.1 mRNA downstream 59199 13026096 ~ 13027361 (-) True si:ch211-191i18.4
XM_043218089.1 mRNA upstream 10245 13099675 ~ 13102985 (-) True psmb4
XM_043217498.1 mRNA upstream 24784 13114214 ~ 13117877 (-) True zgc:110239
XM_043217496.1 mRNA upstream 29882 13119312 ~ 13124815 (-) True LOC122323573
XM_043217497.1 mRNA upstream 29882 13119312 ~ 13121997 (-) False LOC122323573
XM_043217167.1 mRNA upstream 36736 13126166 ~ 13131495 (-) False sytl1
TU195943 other downstream 57211 13027817 ~ 13029349 (-) True cart4
TU195819 other downstream 417364 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 417364 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 417364 12667264 ~ 12669196 (-) True sem1
TU195513 other downstream 648489 12435779 ~ 12438071 (-) True bet1
TU196058 other upstream 195101 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 405400 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 405400 13494830 ~ 13498090 (-) False G132784
TU196166 other upstream 405400 13494830 ~ 13498090 (-) False G132784
TU196164 other upstream 408907 13498337 ~ 13500461 (-) False G132784

Expression Profile