RNA id: XM_043218094.1


Basic Information

Item Value
RNA id XM_043218094.1
length 2740
RNA type mRNA
GC content 0.44
exon number 2
gene id si:ch211-288g17.3
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17607953 ~ 17612267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTTAGCAGGCAGCTAACAAAAATCGCCAGTGCCTCACATTTTACCTGGAACTACAAAAGCTCGCGGGCTTCACTGTACATGATGGCAGCCAGTCCGCAGCATCCGCTCTTTTATGCGTTTTACACGGCGTGAGATCATTCTCAGCACCAAGCAGACGAGTGTGGCACTGATACGCCTGAAGTTGTGAGCGAGAAGCTGCAACGTGATGGAGGTTGAGAATAAAGAAGGAACCGAGAGCCCTCTGCCCAACGGCAGCACCCATCCACCCAAACGTGGACGAGGCAGACCACGAGGGTCACTCAATAAGAAGTTCCCTACCGAGAAAGCGCCGACACACAACGCCAGGCCATCCAAAAAGGTGGACTTCTTTTCTCCCGATATAGTCATAAAGACCAAGGTGAAGAAACGCGGTCGACCAAAGAAGATAAAAATGCCCGGCAGGCCGAGAAAGATCCCTCTAACGCCTGAGGAAGAATCAGAAAGACTTCAAAGGTTGAATTTACAGCGCAAGAGAAGACTGTCAAAGCCGCTCGGAAGACCACGCATTCATCCCGTCGCCGAAGGTCCCAAGGTAAAAAGAGGAAGAGGCAGACCGCGCAAGTACGCTGCTAAATCTGGTTCGCAAGGTGGAGCCAAACAAGCTGGTGTTGACATCAGCCTTGATGCCGCCAATGGTCCTCCACGAAAGAGAGGAAGGCCGGCGGGCACTTTGAAGAGAAAGAGGGGTCGGCCCGCAGGTTCTACCAAGATTGCCAGGGCCTCAGACGGAACCCCAAAAAGGAGAGGCCGCCCTCCAGGCTCTCCCAACAAAGTGAAGAAGGTTCAGCGGGCTGAAGGATCTCCTCGCAAGAGGGGCCGTCCCCCAGGCTCTGGCACCAAACTGAAGGTCATTCAACGAAACCCAGACGGAACACCTCGTAAGAGAGGCCGACCTCCAGGTTCCGGCCAAAAAGTTAAGATTGTCGAAAAGAAAGTCGGTGACACTCCCCGAAAGAGAGGCCGGCCTCCAGGTACGGGAAAAGTCAAGGTTCAAGCCGCAGAAGGTGGGGAGACGGGAGGTGAGAACGCAGATGACGCCGCTCCGCGCCGTAAGAGAGGACGTCCGAGCAAAGTCAGACTCGCAGTCGTGCTTGAAAAACTCCCCGCGGCATCGGCacaagaagaggaagaggagaccGACGCACCCTCTCCCAAACAATCCCGCACCTCGGATGATTCGTCGCAAAATCCAAACGAGGATGACGAAGACACCAGAGCGAGCGAGAACGACGCAGACCCAGAAGACGAAGACGACGAAGAAGACGCCATCGATTGCTCAAAAGTCAACAACACAAGCGAGAACGAGATGGTGGGCaaattcaaaaaaaagaaatgaaaagataaGGGGCTTCATTGAAAATTGGTGGGTATATTTTTCGAAGGGTTTTAATAGGCTATgtcaataatttttttgccttttttttaatctgacaaaGTGTGCTTTTGATGTTGCCTGCCATGCcagactgtattttttttttctttctcttttattttgaagctcaTTAACCGAAATGTTTGCTCACAGTCTGATTGAGCgcaattgttttttctttgttgttttttttttttttttttgcatggggaaaaaaaagtgtctgcATAATAATTTGAAGCATGCAAACTCGAAGGACAAGTATGTAGCCTGTTAACATCGTGGGATCCAAAAAGATGATGCACAATTAACGGTTCCATTGAAAACGTTACCATGCTAAGCACACCTTATTTGTTACCAATGGCTTGTGCCAATAATTTCAGAGCAACTACCAAACCAGACTGTTTCAGATGTAGTATCCTCACACCTGTGCAGTAGTCTGTGTGCGCAGGATTTTAAATTACTCGAGGctaatttttaaaattgacATCGCCCGGATGGTTTTTAGTCGATGTATTAGTGGCTGTGAAAATCTGCAGCTTTTTGAGGATGACGGTTAAGTGcgtttttgctgtagttttatttctttttaccaTCGTCTGTTCATTCATGTTTCAACTCTGTAAAATCAGTCCTGCCGAGTTCAGTGTTTTATAGTGAAACAGTCTTATTTTATGCTTCGTATCATCAGATCTTTGTCTGATAGTTCGGTCATATATAGGTGTTGAGTGCTTAGTTTACGACAACCCCtcatttttgctaaaatattgTGATTGCTTCATTTTTAAGACATGCCgttgtttttcaaaatgtgaataCATACAAAATTCTGCTTCGACAATAGGCTCATGGGTCCcggtttttaattttcatatcatttatggctttttatatacatttcttgtTGCTCCTGtctttttgaactttttctCATGTAACcgtttgttttttctctttgattTGCTTAGTTTGTGTAAAAGCTTAGAGTTCTCTTGCTATAAACCGTAGATCTTGTCTTGATTAATTTTCATGTATGATTTAGTTTTAATCTGTATGTACCAGTAGATGCCGAAAACAGATTGTTTTAGCCGAGATCTTGCATCTAGAAATGTTCTTtcatgttaataaaacagttaCTGTTAAGACATGATGGTTCAATAGGCATTAAGTGCATTTCATGTACGAGCTTTATAATTAGGTTACTCATTTGTGCTATAGtgagaaacatttctgtatCACCGCTTTGTATGATTCATTTCACTTTGTGATTTGGATGAGCATTGTTGCTGATTAATAACCGATTAAATCATACCATATTCACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198250 lncRNA downstream 13629 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 262737 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 318573 17287667 ~ 17289380 (-) True G133951
TU197789 lncRNA downstream 339905 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 346454 17260710 ~ 17261499 (-) True G133920
TU198267 lncRNA upstream 8150 17620174 ~ 17645633 (-) True G134252
TU198296 lncRNA upstream 177003 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 177527 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 185041 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 240148 17852172 ~ 17857186 (-) True G134299
XM_043218490.1 mRNA downstream 29964 17554552 ~ 17577989 (-) False fam131ba
XM_043218489.1 mRNA downstream 29965 17554552 ~ 17577988 (-) True fam131ba
XM_043217216.1 mRNA downstream 73845 17526412 ~ 17534108 (-) False styk1a
XM_043217215.1 mRNA downstream 74421 17526413 ~ 17533532 (-) True styk1a
XM_043217217.1 mRNA downstream 75248 17526412 ~ 17532705 (-) False styk1a
XM_043218404.1 mRNA upstream 1422 17613446 ~ 17616277 (-) True LOC122324164
XM_043218172.1 mRNA upstream 37858 17649882 ~ 17656526 (-) False si:ch211-288g17.4
XM_043218171.1 mRNA upstream 37858 17649882 ~ 17656525 (-) True si:ch211-288g17.4
XM_043218170.1 mRNA upstream 46035 17658059 ~ 17662089 (-) True si:rp71-15k1.1
XM_043218169.1 mRNA upstream 46035 17658059 ~ 17661980 (-) False si:rp71-15k1.1
TU197840 other downstream 273719 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 323209 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 389204 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 707177 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 709352 16897995 ~ 16898601 (-) True LOC122324115
TU198224 other upstream 1456 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 317665 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 317665 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 398858 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 572117 18184141 ~ 18188021 (-) False si:dkey-266f7.5

Expression Profile