RNA id: XM_043218098.1


Basic Information

Item Value
RNA id XM_043218098.1
length 2914
RNA type mRNA
GC content 0.45
exon number 12
gene id gpnmb
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15976332 ~ 15983111 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagaagagaGATCGGGAGTCACGGAGGGAACGGACGAGGAAAAGCCCTTGGATAAATTATAGGCTATTTGCATTCTCACTCAACAAATCCACATATGCATTTGGAAATGTTACTGGTGCTGGCCTGTGCGTTGTTCGTTCCTCTAACTGACAGCAAAAAGACTTATGGTGACATGTTCCCTCACAAACACGACCTCCCTATTCCATTCCCAATCCCTGGATGGGAACCGGACACGAACCCTTGGGACGAATCTCTGTATCCCTCCCTCAAACAGCTGCTGAATCGCAGACATGATAAACCACCGAAGGTGCGCCTCACGAGCGACAGCCCAGCCATGAACGGCTCGAGCGTCTCATTCACCGCAGCTCTGGAGTTTCCACCCTGTCAGAAGGAGGACAGCAACGGCAACCTGGTGTACGACGAGCACTGTGACGACGCCAATGGACAGGCGCGTTCAGGATATGTGTTTAACTGGACATCCTGGTTGGATGACTATGGCTTCGGAAGGTGTACAGATCTGAAGAGGTGCAATGTTTTTCCTGACGGAAAGCCTTTTCCTCAGAGCAATGACTGGAGGCGTAGAGGTTATGTGTACGTGTGGCACACCATGGGCCAGTATTTTGAGACATGTGATGGCTCCTCCTCCCATCTGACCCTGAATACCACTAACATGACGTTTGGAGCTGGTGTGATGGAGGTGATGGTGTACCGTAAACGCGAGCGCAGGAAGTACAGCCCACTCTCTGTGGACAATACCGTGTTCTTCATAACAGATAAGATTCCACTTTCTGTGAACATTTCCCAGAAGCATCCAGCCAGCATATCTGACAAAAACGTCTTTGTCAGAGGGTCAGATGTGATTTTCAACGTCCAGATCCACGACCCAAGCAACTATCTGAAGACAGCTGACGCGGTGGACTTCATTTGGGATTTCCGGGATGGCAACCAGTTGGTCACCCACAACAACGTGGCAACCCATGCCTACAACACTCTTGGAAACGTGACAGTCAAGCTCCTCGTGGAGGCATCGTTCCATGTGCCCTGCCCGCCGCCGACTCCAACGCCAATGCACTTCACACAAGCTCATACCACGGAGATGCCCACGTTACCGCCTGGCACTCACTCATTCACAGCCAAAATGGAGACCACCAAGGCTCCCATCATCACCAATCCTTCACCAACCACCACTCCTCGAGTCCCTACAACTGCTGTCCCAACAGCACAACCGTTCCCAACCGATTCAGAGGCGACGTCCATTACAGCAAGCGCTGTGCCTGAGACCACTTCCACCTACAAGCGGCCCACCACACCGCCgatgatcaaacacacacacttcaaggACTGTTTCCGTCATATGTACGGATCCTTTGAAGGCGAGATCCTCATCACCGAACCCCCTCTGTCTCTGCAGAACCtgccaaccaatcagattttaaaGGTGTCCGCCGACAAAGTGTCCAACACATCTGTAAACTTCATGGTGACTTGCTCAGGCAGcgTTCCCTCGGTGGCCTGTACCATAGTGGCCAACTCCACCTGTCAGGAGGTCAAGAACATCGTTTGCGAGGACGTGGCCCCTTACAGCGAAGGATGCAAGATCAGCTTGACGCGCATTTTCCAAACCCCGGGAAATTACTGTGTTAACATCACGCTGGGTCTGCCCGGGGGCTTGGCTCTTGCCACCACCACCTCGGTCACAATCGGCAACAGCCCTGACATAAGCTCTCCTAAATCCTCCCATGTAGCCGAGGTGGTTCTGTCTTCCAGCGCTGTGCTTATTTCCATCTTTGCATTCATGGCGGTCATGGTTTACAAgcGATACAAGGTGTATCGTCCGGTGAGACGCTCCATGTTGGAAGATGCTGAGAGAAATGCTGGCAGCTGGAGTTTAGGCAAACTAAGAGCAGCTCTGTCCTCCGCCGATGAGGAGAGAAGCCGTCTATTGACAGAGAGGCCACTACAGACTGATCCCAGATGAAGCAAAGTTGccatttatttgatacattatttggtatattttgatattatttggCTGTATAGGTTACGTAAACCAACAAGAGATGTCATAGATGTTCTTTAAGATTAGATTACACTGGCATATGTTTGACTAAAATAAGTGTTCATAGCATTTCAGTTATATCACTTTCAAGCTTTAAAGATTTGCAATGAAagatttgaaatgaatgaaatcagATATGCCAGATCTACAGGGATTTCCatctaaaatgactaaaactactACTAACCAACCAGTCAGTCAAATGCATGAGAAATCATAgtttggctttaaaaaaaaaaaaaaattaaatatatattttgattgaaAGGTGAATAACCCACTTTTGATCAGGATTTTTCAACTAACACTTTGTCTCAATTGATTTGACAAGTTTCTTAATTTGCAGACAGGAAAGTTGATAGAAGATCGatgttttataaaaagttaatCTTTATTTTGATCACAGTTAAGAGATATTTGAATGTCCGAGGACTGAAATTggtgcgctttttttttttcctgagaaaGACCTGTTTGGTGGTAATTAagctacattttaataaatcgctctacttacatttttttttttttaatatatataccaTGAATTAAACATGGGAAGTTTGTGTTACTGATCTCACATACATGCAGGTATgctcatacattttttaagttaacatttgacagcactttcaGAAATGATCCGATTTTAAAACCTGTTCTCTTCTGTAAGcgctatatacacacacacattgtaataaagtttcaaaaccaCTGTTTGCTTATCTATACTACCTCTGCCACACACACGCttctgaaaagctttttttttttaagatggcagtaaagcatttttaatatagtaTAGGTCCTATGACAGCTGAAATGAATATGGGAATAGAAGAGAAGGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197207 lncRNA downstream 26870 15948986 ~ 15949462 (-) True G133554
TU197116 lncRNA downstream 37521 15937440 ~ 15938811 (-) True G133499
TU197099 lncRNA downstream 77563 15896816 ~ 15898769 (-) True G133487
TU197081 lncRNA downstream 94755 15880944 ~ 15881577 (-) True G133476
TU197075 lncRNA downstream 113183 15862942 ~ 15863149 (-) True G133470
TU197212 lncRNA upstream 4828 15987939 ~ 15996866 (-) True G133558
TU197220 lncRNA upstream 22001 16005112 ~ 16101982 (-) True G133564
TU197233 lncRNA upstream 34416 16017527 ~ 16024738 (-) True G133570
TU197254 lncRNA upstream 141199 16124310 ~ 16126708 (-) False G133587
TU197255 lncRNA upstream 141199 16124310 ~ 16126708 (-) True G133587
XM_043218455.1 mRNA downstream 39855 15931884 ~ 15936477 (-) True fam221a
XM_043218456.1 mRNA downstream 41158 15931884 ~ 15935174 (-) False fam221a
XM_043218457.1 mRNA downstream 41160 15931884 ~ 15935172 (-) False fam221a
XM_043217262.1 mRNA downstream 52067 15922225 ~ 15924265 (-) False npy
XM_043217903.1 mRNA downstream 57017 15902791 ~ 15919315 (-) True pals2b
XM_043218382.1 mRNA upstream 6468 15989579 ~ 16005685 (-) True rftn1a
XM_043217238.1 mRNA upstream 23194 16006305 ~ 16011313 (-) False dazl
XM_043217237.1 mRNA upstream 23194 16006305 ~ 16011143 (-) True dazl
XM_043217510.1 mRNA upstream 28733 16011844 ~ 16033512 (-) False tbc1d5
XM_043217509.1 mRNA upstream 28733 16011844 ~ 16033512 (-) True tbc1d5
TU197117 other downstream 52047 15922223 ~ 15924285 (-) True npy
TU196955 other downstream 315612 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 327753 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 591066 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 606596 15366434 ~ 15369736 (-) True G133217
TU197532 other upstream 297846 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 368758 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 376680 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 517834 16500945 ~ 16508560 (-) False mbpa
TU197668 other upstream 873868 16856979 ~ 16869564 (-) True G133834

Expression Profile