RNA id: XM_043218104.1


Basic Information

Item Value
RNA id XM_043218104.1
length 7631
RNA type mRNA
GC content 0.39
exon number 2
gene id mc5ra
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4244693 ~ 4267138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAGAGATTTTGAAAATGGATAAATGATTATCGTCGAAATGATTGTCTCTTAcagtctctctctatctctctctctctctatatatatatatattgtgagaGACACAGTCAAAGACAAACGGCCAATCACTTTTAATCACGAAATGGAACCTATATTTTAGCTTAAACCAATACATTGATATACTATATAATTTCATCTGAAGAGCATATGCAGTCATTTGTAAAGTGTATAATGTTGCGTTTCTCTTAGAGACGAAGAGATTAATCAGATCCAAAGGAAATGGAGGTTATTGATGGAGGAAATTGTCTGTCTGCCCTAGGGACCACTAAAAATAACTTCACCAGTGCCTCGGAAAACATAAAGAGAGCTTTGAACTAAGCTATTGTCATTAACTCTGCCTCTTTCTTTTAAAGTATAACAAAGACCGTATAGCATGCCATCTCTAAAGGGAAGAAGTTCTGTAGAGTATTAAAACGTAAAGCCATCAGGCGGGAAAACGTATACGAAGAGcacaaaaaacagtcaaacaaaaataaatactcgTCACGAAGAAACTTGTTTAACCAAATCGTAAAATGTTCAACTGTGGCTGATCTGGGGAGGTTTTTCCAAGGAATGAAACTCTAAAAAGACTTATTTATCCATCCATGATGACTTCAAAAGAACAAGCTTGTGACTTCCATCACAAGTTTTTCATTAGCTGACAGCCTGTTGAGAAACATATTCACAGTTTACATTTACTGTTATgcatataagtatatataaccAAAGAGACGGCCCTTGTTTTTCAGCTTCCCTAATCAGTAATTGTCTCCCACAGTTATGCAGGATTTATTGAAATTTGTTCAGGCCGTGGTAACAGAGATCACCCTGATACTGCCTTCTCAATGCACTTTTTGTTCCCGTTTATAAAAAAACAGTCATGGGTTCAGTTTGAGCGTATTTCTCACATGTTGATCCTGATGCTGAGCTGTCATTCTCAGATTTATCTGGATGACCTAAAATAGTCCTATCCTAAAATAAACCCGGAAAATTTCAAGAATTGATGCAGGAATTTCGAGACAAAAAGAAACCATGTCACGTTACATAAACTAGCATCACAGGTGCCCATCCTTCTCTACACATTATAACAAATGTGGCTGTTAGAAATATATCCTTATAACCTAGCTTAATGTGAAATTAATACATAAGCCATATGTAGGTTTTGAAGACTGTACATGCAGTCAGCAAGAAAAGGCCGCGTCCGCTTTGGAAGGCtgtgactgaaataaaaagtttaaaatttaaGAACATGAATGCTCAGCAAtgaatgctctgcagtgaatgggtgccgtcagaatgagagtccaaacaactgaTCAAATCATCAAAATCATCCAAAAGTGATCCACCCCCCTCCAGTCCAGTCCATCAGTTGACATCTTCTGAAGCAAACAGCTGCACGATTGTCCGAAACTACTATCTATAatccattctgacggcacccattcaccgtaGAGGATCAATTGgagagcaagtgatgcaatgttGAATTTCTCTATatctgttcccatgaagaaacaaactcgtctCCTGCTCAGAAGGCCCGACGGTaagaatattttcatatttagtaGAACCACCCCTTTAAATTCTGCCAGCTATATCATGTctgcacaattaatttttcatattcTTGTATTCCCCATATTGCAacttgcaaacaaaaacaatgataGATGATGGCGATTactgttatttataatataattcttttttggtaacactttctatgaagcctgtatttataatacattataagggtatACTTAACGCATTATAATACAtgtcatattcatattcataagaacagttttaaGGTGTTATAATTTTTCACTCATTTATGGTTGTAGCTTTTCAGAGTATGATCATTTATAACACACGGCGAACGTGATTCATCCCCTTACGTTACAGTggattatatttttcatatttataagtCTTTATGAGCATTATATTGTGccattttatttgttagtttacTTAAAGTACACAAATACCACTTatatgtagtaataataacaataatacattaataatagcaataagATCATACATCAAATCAGATGAATcagattattttataatatcagtttgattattttgatgataCCCTGCAAACTACAACAAGCCTTCATTAGTGTGCCGCTAAATACATGCTAACgctttattttgcacttttttttacttcacaagtaTGAGAACTTTCTACCCACCCTATaaagtctacttatactctcaGGTCTATataataaacagcatttctttcagttgaaagtaCGAGCTAGCTCACATTAGCCTCAGTATTAGCCTCACAGGAAGCAGTTAGCCGCTCACGAGATGTTGCAAGATACTgtgcaaatatgaaataaacaaggTCAAGATATGATACAGTCCTTTATAAATGAAGCAGATTTAATATGGTGTTCactgtgtgttataaataatcacACTCTTAAAAGTTACAATCAGAAATAGTTAAATGTTATAATGCGTTACAACCGTCttcatgattatttttaatataatgcatcatgcattcattataacgccccttataatgtattataaatgcacGCTTCGTAAAAAACGTTGCTTTTTTATCACTCAACTTATCCTTATTGCAATGATGTGCCACGAGcaataaagaaatgcaaacTGATCGTCGATTACGTTGAACGCAAAGGCTCTTTTCTGCAAAGTTGCAAGCATTCCGTTCGCGCAACATGTCAGACAGACTCGGAGTCTGATTCCTGCGGCGTGAGGATGCTCTGAAAGCTTCAGAAGCTCTGGAGGTGGAGCTGTGGCCGTCCCCGATCCTATATATGCATCCGATGCAGCAGAGCCCCTTTCTTCACAGAGATCTTCAAAAAGCCCTGGACTGAAAGAAGCGCACAGCCTTTGAGATCCTTAGCAGGTTTACGTCGAGACAACTCCCGCTCCGAACAGGTTAAAGATGCCCAACCCACCAACCCAGTGACTCTAAGAAAAGCCTACAACACTCTCAATGAATCCCTCGTCCACGATGAACACTTCCGAGGCCACCCTGTCCCTTTGGGCCATCCACGTCAACTCCAGTGCCGTTTCATACCTCCTCAACGCCACCGAGACCCCATCCCACGGCAAGTCCAAAGCATGCGAGCAGCTCAACATCGCCACCGAGGTGTTCCTCATCCTCGGCATTGTCAGTCTGCTGGAGAACATCCTGGTCATCTGCGCCatagtgaaaaacaaaaacctccACTCGCCCATGTACTTCTTCGTCTGCAGTCTGGCCGTGGCCGACATGCTAGTAAGCGTCTCTAACGCTTGGGAGACCATCGTCATCTACTTACTCACCAACCGCCAGCTGGTGGTGGAGGACCATTTCATCAGACAGATGGACAACGTTTTTGACTCTATGATCTGCATCTCCGTGGTGGCGTCCATGTGTAGTCTTCTAGCTATCGCCGTTGACCGTTATGTCACAATTTTTTACGCTTTAAGATATCACAACATTATGACGGTGCGCCGGGCCGCACTCATCATCGGTGGGATTTGGACGTTCTGCACAGGCTGCGGAATCGTCTTCATTATCTACTCCGACAATACCTCTGTCATTGTGTGCTTGGTTTCCATGTTCTTCATCATGCTCGCGCTCATGGCCTCCCTCTACAGCCACATGTTCATGCTGGCGCGATCTCACGTAAAGCGAATCGCCGCCCTGCCGGGCTACAACTCCATCCACCAGAGAGCCAGCATGAAGGCGGCCGTCACCCTGACCATCCTTCTGGGGATCTTCATCGTCTGCTGGGCTCCGTTCTTTCTCCACCTCATCCTCATGATCTCCTGTCCCAGAAACCTCTACTGCATGTGCTTCATGTCGCACTTCAACATGTACCTCATCCTCATCATGTGCAACTCGGTCATCGACCCTCTCATTTACGCTTTCAGGAGTCAGGAGATGAGGAAAACGCTGAAGGAGATCATCTGCTGCTACAGTCTGAGGAACGTCTTTGGAATGTCCAGGTAGTTTCAAACCCCAAAAAACGAGAGATGGGTGATCATTTCACAACAATTTAAGAAAGTCTTAGAAGATATCCCAACCCTGCCTTGGTCTAGatggaaaatatgttttttttgtgatgataCTCTTTCAAACTCTATCAAACAAAAAAGCCAGACAATTAATCAGGAGCTCTTCAGTGCGCAAGGATGCTAATTAGAATGAGGCAATTGTTGATAATATATGTAGATATTGCTGGAGAATTAAGGAGGCCTTAGAACTATGGAACAATATAATCCTCAACAGACAATGGGTTTTAATATCGCAGTCTCCAGGGACATGCAggagctgtcaatcaaaatcTGTGGGAAAAACAAGTGCAATCATTTGTCAAATTAATCATGCAAAACACAGCTTGATGTATTGTTGTATAGGTAAGATGAAACTGTAATAATGCATGCAATTTATATTGCTGAATGCACTCTGTGGTTAGCGTTGAAACTAAGAAAGTATGAGCCACTCTATTGAATCCCAAGATAAAATCCAATGCCGGCagtcttcagtttttttttaatggcacaatatatatagacatattacAAGACAGAACATGAAGTACACTTATATaagaaaactgagaaaaatgGATTTACTGTCATGCTGTTCATAAAATGTGTGGTTAAGGTTTCAAGGCTTATCATGTCACTACCAATTTTTCTACTGTCTTCAGGTGTTCTGCAATAGATGGAATTGAAATGCTCCACATATGCCtgtacaatgtgtgtgtgtgtgtgtgtgtctgttttatgtagctgcaaaaaagaaataaaaaatagtctTATATATATTGATACAAAAAGCATAGCAGAGAAAATTAGTTCTATACTGTCTGACGAAacgtcaaaaacaaaacaaaacattggtATTGCTGACTTGTCATCACAATTAAAGCATTTGTGGAAATTCTGccaatttatatattattataataagcaCGAATGTGTACTTGAAGTTCAGGGTCTGCAATTATTCACTGTATTTACTACTGaccctttaaatgtaataacattCATTTCTATGGCTTACAAAAAAATCATCGATGTGTATTGGCTATGAAGTTTCAGGGTGAGAGTCCGTGTTTCTGTTGTTTGTGATTATGCTGCTTACTGTTTACAGCCACTGGAAAAAAATCTGTAcagatggattttttttgcttgttgttTCTGCATTCAATCAGTGCCACTCAAGTTAAAGACTAACAGATGTCCAGAAATAAAGTGAGGACTAAATTACATATGTTTTCATTGAATAGTCAATGTGTAATTGCCACAAAccacatgcatgtttttatttaacctgGTCGaccaaatgcatttatatgaatatattcacgagaccggggctagttgtcacactcTTTTAGGCGGTTACCTCTAATGCTTTGCACAAAGGTGTAGCCTTTTAAAGGCACCTTTTCTTTCTGAGAGTGTTTAAGAAACAAggaacaattaataaaaaatcaaaaatgtgacTTAAATTCCAAACCAAATGGAACCATAACTTATCAAATGTGACAACTTCACTTGTCCAACAAATATAGCAGATATATAGAATTTTTAGCTTGGAGGAAATAATGATTAGGAAAGAGAGACGTCACGTCGATACAGACGAATTGGAGGTCTTTCCAGAGAGACCTTAAGTCTGTCTACACATGCTTGCCTCGTGAGACAGTTAAGGCAAGGTGCACCGCTATCGACTAGGGAGCAAAAAACTAGGTTGCAAAAAACACTTACTTGTTCCACAGTTGGGCAGAGTAGGACCTTTGAGAGGGACCAGCACGTTCCCTTGGTAGCCCCACTGCCCGGTGGAGTGAGGGTCCCTGGGAGGTTGGTTCCtcactgtcactttaagaccaCTCAGGTGACTGACTACCTGAAGCAGCGATTGTGACCACTtaacctaaccccaaacctaaacctacccattttaTGTTGAATATAAAAGGATataaaacacaactgaaaaaaGATATCAAACcattgttgtaaaatatttttatactcgCTAATCCCACTCCTACctctaaacctaaacataactatctctgtacagtataagcaaaacaagacagacagataaatgcacaatcatttatttattgcaaaaatgtgaaaagcGGTACCAAAAGTAACCCAAACGACGATGTTCTGCAGCCACTGTTCTCTCTGGCGGAATACAGTAGGTTTGTGTAAGACGCAGAGcaaataaaattgtttcatttcaCAATGATGTTGcgtttttgatgcattttatagTTCTGTTGTCAGTCACAGAATGTCAGAGAAATTTAGACATTAAGTTAAATGACAAGTAAAGATTAAACtattgcagaaatgttgttttaaagaattaaaatgaagtCTTGTTTAACATTATGAAGGCCTGTTTTTGGAGTCGAGCTGGCAGCAGAAACTGATATGACAActaaaagcagcaaaaataataaaatgaatgttgatTTTAATTAGGGTTCACTTTTTTAGGTGTGGTCAGTAAGTCAGGTTTGTACGTTTGAATGCTGAAAATATGTAAGTATTTGTAcgtttagattttaaaaatatgtcagttttgtacattttagtgcctttatatttacattttatattaacattttgcaaacaATGCGTATGAATTATCATTTCCAATTATAATTTCCTAATTGGCTGATTAATAGTTAGTGttagaattagggatgtagaataaggcattattatgCGTTTAATTAGTACTATAAAAGGCTAATATTTTAGtgatatgcatgcaaataagcaactagttaaaagaccttaaaataaagtgttatcattttaatttgctttttttaatgtaaacctATTGAGATGTAACCCTTGTGACGACTAGCCCCGTTTTTCTCCAGAAACTCTTATCCAACAGCCTACTAAATGCACACTGGGTTTCATACAGTGCGTTCATGCCACATGTATATTCTATAAAACGTTTTATATTTGACTTACAGTAGTATTCTGGTTGATTATCGTCTTCTGATTAATATTTAGTCTCTGTTACTGCTTCGACTGTGTAAATATGCTCCGTCTGGCTGTTGCTCAGCTTGATTTTTCCCTCTTCAGAAGAATAAGGGCATCCCTCCCTCAACGGGCTCATGCCGGTAATCATAGAATGTGCCTTCACCGTGTCCTGTGCCGTGGAGATGACCTGGAGGCTGTCGGAGCCGTCCTCTTGGTCTCTGTGTGATACATTAACTGCTCAGGTCTGCTGGCTCTCCATGAAGAATCAATGACAATCTGTCTCTGAACCCCTCACTGTTTCACCCGAAAGCGTCTTGAAATTTATTCTGGAGTGGTTTCACGCCCACAGACAATTATTAGACAGTGCCAGTCGATACacaaatataaagatatacGTAAAAAAGAcacgtttttcatttttgtcttggGTAAAACGGCTGGTTTGAGTGGACGGCAGTATTTCGCCTCACACTGTGATAAATGCTCTGTGCATCTGTGTTATGCCGTATGATATCTTATTTGGTtgcatgtataattaaaatataagaatgaaGCTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04203 MC5R; melanocortin 5 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192473 lncRNA downstream 12278 4228999 ~ 4232415 (-) True LOC122323452
XR_006247013.1 lncRNA downstream 12313 4230499 ~ 4232380 (-) False LOC122323452
XR_006247012.1 lncRNA downstream 12313 4230499 ~ 4232380 (-) False LOC122323452
TU192454 lncRNA downstream 34420 4187442 ~ 4210273 (-) False G130360
TU192457 lncRNA downstream 34420 4187442 ~ 4210273 (-) True G130360
TU192607 lncRNA upstream 41 4267179 ~ 4267424 (-) True G130459
TU192611 lncRNA upstream 20350 4287488 ~ 4287870 (-) True G130463
TU192614 lncRNA upstream 31371 4298509 ~ 4300326 (-) True G130465
XR_006247040.1 lncRNA upstream 136879 4404017 ~ 4405900 (-) True LOC122323668
TU192654 lncRNA upstream 141056 4408194 ~ 4408394 (-) True G130494
XM_043217342.1 mRNA downstream 26980 4211439 ~ 4217713 (-) True cthrc1a
XM_043216972.1 mRNA downstream 45451 4074040 ~ 4199242 (-) False rims2b
XM_043216973.1 mRNA downstream 45759 4074040 ~ 4198934 (-) True rims2b
XM_043216977.1 mRNA downstream 68841 4074040 ~ 4175852 (-) False rims2b
XM_043216975.1 mRNA downstream 68841 4074040 ~ 4175852 (-) False rims2b
XM_043218103.1 mRNA upstream 18154 4285292 ~ 4296757 (-) True rnmt
XM_043218106.1 mRNA upstream 36277 4303415 ~ 4376360 (-) False ldlrad4a
XM_043218105.1 mRNA upstream 36277 4303415 ~ 4376360 (-) True ldlrad4a
XM_043218107.1 mRNA upstream 36277 4303415 ~ 4325888 (-) False ldlrad4a
XM_043218276.1 mRNA upstream 111376 4378514 ~ 4387615 (-) False seh1l
TU192049 other downstream 1094904 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1333090 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 1411737 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 1493123 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 1925320 2319236 ~ 2319373 (-) True LOC122324259
TU192945 other upstream 540959 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 820106 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 820106 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 833683 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 874367 5141505 ~ 5158002 (-) True G130744

Expression Profile