RNA id: XM_043218125.1


Basic Information

Item Value
RNA id XM_043218125.1
length 3381
RNA type mRNA
GC content 0.52
exon number 10
gene id gmeb1
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2331733 ~ 2341123 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tacataTTTCCTTTACATGTAACGAGCTGCCCAAACactgaatattaatatacaaattaagAGTTCATTTGCAGAAACAGATAACTCAAAAATCATGTTGCAAACTACATtcgaattgttttatttaaacaaggcctcaacaaaacagaaaaaacacgGTGACGCTAAGAAACGACGTGTTTTGAAGTTGCGCTACACATATAAACAGACGAGAAAGCGCAGCACGAACCGCGAAAGAGCAGATACACAGCGAAAACGCTAACCTTCCACCCATTTTAAACCGATACTAACCAAAACCTTTCTCTAAACCTCGCGTGTTTCGGCGTACTGCGGTGGAACACAGTCTCTCATGGCTCTGTCCGTAACAGGGACGAGCTTGAGCAGGAAGTGTAGCTCAAACAAACTGCGCATGTTCACGCAAAGCCTCTCGCTATGTAAGGATGACACCGAGCGCGATCTAAACGCTTGACTGTAAATCCCAAACATAAACCAGGCCTGTGATGCTCCTCAGTGTTGAAGGAGCGCGAGGGCTATGGCAGAGACAGAAGTCACTGTGTCCGTGGAGGACATGGTGGTGGTGAAGAGCGCCGAGGAAGAGGATGCGGATCCAGACAGCCAAAGCAAGAATCAGATGATCCTGCAGCTGCAGCCCATCACGGCTGGGCTCGGGGAGGAGAGCAGCGAGACAGATGCTGCAGTAGTTGCCGTGGAGACACAAGatGAGGTGTCTGCCGAAGTAGAGGATTTGGAGCTCGGTTATCCCATTACATGCGGCGAGAGTAAAGCCATCCTTCTATTCAAGAAGTTTGTCTGCCCAGGAATCAATGTCAAATGTGTGAAGTATGAGGATCAGTTGATTAGTCCGAAGCAGTTTGTGCACTTGTCGGGTAAAGCCACCTTGAAGGACTGGAAGCGAGCGATCCGGATGGGAGGGGTTATGCTCAGGAAGATGATGGACTCGGGTCAGCTGGATTTCTATCAGCACAGCACGCTCTGCACAAACACCTGCCGCAGCACCAAGTTTGACCTGCTGATCAACAACACGCGCTTCCCACCGGACGGCAGTGGGCTCAGCACTCCCACCACAGCTCAggGGCACGTTTCTGTGGGTAACGGAGGTCAGACAGCCACAGCggaggagaagaaagaagaCATGCTCGGCACGGTGGAGTGGAGCACAGCCACTTTAGAAACCACGGAGAAAAGAGACTGGCCTGAGATCTCAGACGAGACGCTGAGCTTCTGGAGGGGAATCGCTGAGGTGGGGCTGATGGGGGAGGTGGTGTCTAATATCCGCTCGGAGCTGCTGAGTCTGCTGAGAGGAGTTCAGCTCCGCACGGATCAGAGTTCTCTACAGGACGCAGAGATTGCTGTTCTGAGTAACCTGGCGCAAGTCTTTGACCTGCTGGACTCCATCAAACAGATTCTGAATGTTCGACGGCAAATGACGGACCCGGATCAGACGCAGGTCCTCAGAGTACTGACAACGTTGGAGCAGCAGGTGGAGGAGCAGAAGCGGCAGCAGTCTCTCAGCTGGCTGTCTCAATCCCAGGCCCTCAGCAGTCTGGTTCTCCCCTCCACGCCTCCATCCAAACGCGCTCCCAAACGCCCCCGCCTCCAGCGGCCCGCCTCCACCACCGTGCTGGGCACGTCTGTCGCCCAGCCGCTCACCCTCCAGCCCCAGCAGTTCACCGTGCTCTCCCCCATCACCCTCTCCTCCATCGGCCAGTCGTTCGCGGTGGCCGGCCTCAACCAGGCCTCCAACACGGTCACCCTTCACGCCCTCCCCGCCGGCTCGCAGCTCTTCACCAGAATCGCCGCGGGCTCGGACGGGAAAACCGAAGCCATCGCGCTCCACCCGGCCTCCGGGCTCACGCTGCTGGGCGCCACAGCCGTGCCGGACCACGGGCAGCTCGTGAGCCCCGTCGAGCTCGTCCAGTTCGCGCAGAAGACCGCCTCCGGCATGGCCCAGGAGGGTCAGGTGGTGGCAGGCACGGTGGTGATGCAAGAGAGCGTGGTCAGCGTCGTGCAGGAGGACGAGAACCAGGAGAGCGCCACCCTGATCGAGATAGACCCGGCCGCAGCCGAGCACAGCGTGAGCGTCATGGAGCTGCAGCTGGAGGGCGAGGAAGCCGAGAGCGGAGCGACTGTGGTGGAAGGAGGCGAGGAGGTGGTGCAAGGCGAGACGGAGGAGGAGATACAGCTGGATGCCAACGCTCAGTTTCACAATTTGCCCGTTGTAGTGGTGGAGGAAGAGACGCAAGGCACCGGCAAAGCCAAATGACACACCGACACGCTCACACAAACCGCCCTCAGAGACTGACGGAGCGAATCAGACAGGGACGGGGATTGTGTCGCCCCAGGTGGAGTTTGTGTTTGCCCTTCCAgctgtctctttctttcctttttttttttttttagtactctCTTCCTGCACAGCCAAGCTCGGCTCTTCAAGCCTGACGTATCACGTATTTGTAAACGCAGTATtcctttgtttcattttttttttttttttttacctgcgaGAAGCAACAGTTCGTGGTGTTTCGTTGGAACACATTCagtattttgcttttgttttttttccagtgtggaAGTTTAGACCAGGCACTTACTTTTCAGTTTCCCTTTGTTTCGGTGCCAAAATGTCATGTTGTAGTCGGACCGTCTGCTCCGATCTGAAGTTGAAGACTCAAGTGATAACTAAGACACTCCTGTAATGAGAATTGACTCTGTCTGTGGTCTCTTTGTACTTTGACATCAGGGTATAAATGGCACTAATGTCGGCGATGTTTCAGCACAGTGGTTTTTAACTCCAGACCTGGAGACCCGCAGCACTTCAGTTCGATGCAGCGCTCCTCTAGTGATATTACGTGTACATAAAGGAGGTAAAAGTGCTTGGGATATCCGGATCAGAGTTGCGATCCACACCGTTAGCACACGTAACGAAAGATGTGTTATGAATGTTTGTGAATGGATCCTGTGCGTCcttcactgaaaataaaatggatcttcctccccctcctcctcgagttatatattgtaaatgatGGTAGATCGCGGGATTGTGCATTGCAAAGTCTGTTACAGTTACAGTTTTCGTTTCGGAAAGAAATTGCTAATCGATACTTGATCTGGAGGTTTATAAATACGCTGTTGTTAATTTCGCGAAACAAGTTAATTTATTCCGTTTGAGAAATCGTTCATGCGACATTTATAATTCTGTAacgatttactcaccctcgtgtcgttctGAACTCACGGACCTGCTGTGGACCACGAATGGAGATGTTTGGCAGAATGTTCACACGAacacagttcactcaaaacattattttgctgCTTGtctgaatgaattaaaatgagctaATGCATTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K24505 GMEB; glucocorticoid modulatory element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191825 lncRNA upstream 66298 2265217 ~ 2265435 (+) True G129916
TU191792 lncRNA upstream 190428 2139892 ~ 2141305 (+) False ppp1r8a
TU191780 lncRNA upstream 249113 2082278 ~ 2082620 (+) True G129886
TU191775 lncRNA upstream 274851 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 359941 1966740 ~ 1971792 (+) True LOC122323678
TU191849 lncRNA downstream 1912 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 10175 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 37960 2379083 ~ 2379355 (+) True G129947
TU191894 lncRNA downstream 387342 2728465 ~ 2734183 (+) True G129974
TU191899 lncRNA downstream 412901 2754024 ~ 2785827 (+) True G129979
XM_043218444.1 mRNA upstream 3852 2322401 ~ 2327881 (+) True rab42a
XM_043218231.1 mRNA upstream 13700 2311270 ~ 2318033 (+) True ctps1a
XM_043216947.1 mRNA upstream 150006 2153835 ~ 2181727 (+) True foxo6b
XM_043217844.1 mRNA upstream 190401 2134652 ~ 2141332 (+) True ppp1r8a
XM_043217845.1 mRNA upstream 190401 2134652 ~ 2141332 (+) False ppp1r8a
XM_043218191.1 mRNA downstream 39498 2380621 ~ 2564556 (+) True ptprua
XM_043218192.1 mRNA downstream 39498 2380621 ~ 2564556 (+) False ptprua
XM_043218195.1 mRNA downstream 39498 2380621 ~ 2564556 (+) False ptprua
XM_043218196.1 mRNA downstream 39498 2380621 ~ 2564556 (+) False ptprua
XM_043218193.1 mRNA downstream 39498 2380621 ~ 2564556 (+) False ptprua
XR_006247126.1 other upstream 1457 2330141 ~ 2330276 (+) True LOC122324256
TU191722 other upstream 358349 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 659392 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1225160 1072151 ~ 1106573 (+) True G129682
TU191918 other downstream 444802 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 548566 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 629564 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 751944 3093067 ~ 3093714 (+) True G130077
TU192216 other downstream 1418744 3759867 ~ 3760985 (+) True G130208

Expression Profile