RNA id: TCONS_00011069


Basic Information

Item Value
RNA id TCONS_00011069
length 463
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id XLOC_005086
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3519168 ~ 3544016 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAAAGTGATGTTTGGTGTCAGCCGACCTCGCGCCGCCTCCCGCATGATAACGAGCGGTTCTCTCGCGTCCCTCCCATGGATATATGAATAAAACATGACATTACAGTCGGTGCAGGCAGAGGTTGAGCTGAGCTTCTGTCTGCGCGTCGCGTCACTGCAGCAGAGCGTCGCGTTCATGTGATTCTGCGCGCGCGCTCACAGATAAACACCGGCGATATTGATCTGTGGAGAAACGGAGAAACCGAGAAAAACCGGCCGATGCTCAGCGCGGGAGTCTGCGGGAGGAGGACTGTGCTCAGTGTTTAGTGGATGCTGGAGGCTGTCATGACAGAAATCACGAGGAGGAAACATTTCACGCGAGCGGAGGAAGGAGGGACGGAAAGTAAAAGATAAGCGAGGAGTGTGAAAGAAGTGAATAAAGGAAGTGACAGTGCAGGACGTGCGATATTGCATCAGtcgga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010794 lncRNA downstream 132349 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00010793 lncRNA downstream 136484 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00011067 lncRNA downstream 234259 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA downstream 234324 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00009873 lncRNA downstream 649584 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011070 lncRNA upstream 25731 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011071 lncRNA upstream 238605 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00009895 lncRNA upstream 261639 3805655 ~ 3806820 (-) True XLOC_005093
TCONS_00011072 lncRNA upstream 316448 3860464 ~ 3865234 (-) True XLOC_005094
TCONS_00011073 lncRNA upstream 545721 4089737 ~ 4129820 (-) True XLOC_005102
TCONS_00009885 mRNA downstream 65579 3314504 ~ 3453589 (-) False XLOC_005085
TCONS_00009884 mRNA downstream 220019 3287783 ~ 3299149 (-) True XLOC_005084
TCONS_00009883 mRNA downstream 266905 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009882 mRNA downstream 281607 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009881 mRNA downstream 385685 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009886 mRNA upstream 107999 3652015 ~ 3705862 (-) False XLOC_005088
TCONS_00009887 mRNA upstream 108205 3652221 ~ 3705862 (-) True XLOC_005088
TCONS_00009888 mRNA upstream 170060 3714076 ~ 3721957 (-) True XLOC_005089
TCONS_00009889 mRNA upstream 196589 3740605 ~ 3756405 (-) False XLOC_005090
TCONS_00009890 mRNA upstream 196732 3740748 ~ 3753131 (-) True XLOC_005090
TCONS_00009859 other downstream 2028580 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2896879 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 742350 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 751533 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 753841 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 754211 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 1855664 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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