RNA id: XM_043218137.1


Basic Information

Item Value
RNA id XM_043218137.1
length 2039
RNA type mRNA
GC content 0.46
exon number 12
gene id rbbp4
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8430681 ~ 8435138 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCTCATTGGTGGCGCGTGCTCCGCCGTGTCCGTCGGAGTTGGCGCGAACGTGCACGCCGGCGCGAGACAAAGAGCATCCTGCACTCCCGAGGAAACTACACCGGTATCCTGCTATCGGTCGAGTTTGCGAGAGATAGCTGTCTGTCGAGGCGTTATGGCTGATAAAGAAGCTGCATTCGATGACGCGGTGGAGGAGAGGGTGATAAAtgaagaatataaaatatggaAGAAAAACACACCGTTTCTTTACGATCTGGTGATGACCCACGCGCTGGAGTGGCCCAGTCTCACTGCTCAGTGGTTGCCAGATGTGaccagGCCTGAAGGGAAGGATTTTAGCGTACACCGCCTGGTTCTCGGCACACATACCTCTGATGAGCAGAATCACCTGGTTATTGCCAGTGTCCAGCTGCCCAATGACGATGCCCAGTTTGATGCCTCGCATTACGACAGTGAAAAAGGAGAATTTGGTGGGTTTGGCTCGGTAAGTGGCAAGATAGAGATTGAAATCAAGATTAATCATGAGGGAGAGGTGAACAGGGCTCGCTACATGCCGCAGAACCCCTGCATCATTGCCACCAAGACCCCCACGAGTGACGTGCTGGTCTTTGACTACACCAAACACCCCTCCAAACCTGACCCCTCCGGAGAGTGCACTCCTGATCTGCGTCTGAGGGGACATCAAAAAGAAGGATACGGTCTGTCCTGGAACCCCAACTTAAGTGGCTGCCTACTGAGTGCATCTGATGATCACACCATCTGTCTTTGGGACATCAGCACGGTTCCAAAGGAGGGAAAAATAGTGGACGCTAAGACCATTTTTACCGGTCACACCGCTGTAGTGGAGGACGTGTCTTGGCATCTTCTGCATGAGTCTCTCTTTGGGTCTGTTGCAGATGACCAGAAGCTTATGATCTGGGACACGCGCTCCAATAACACATCCAAACCCAGTCATGCAGTAGATGCTCATACTGCAGAGGTCAACTGTTTGTCCTTCAACCCCTACAGCGAGTTCATTCTGGCCACCGGTTCTGCTGACAAAACTGTTGCGTTGTGGGATCTGAGAAACCTGAAGCTGAAACTTCACTCGTTCGAATCGCACAAAGATGAAATATTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATACTGGCCTCCAGCGGGACAGACAGGCGGCTTAATGTTTGGGACCTCAGTAAAATCGGTGAAGAACAGTCACCAGAAGATGCAGAAGATGGACCTCCAGAGCTACTGTTCATCCATGGAGGCCATACAGCAAAGATATCTGACTTCTCCTGGAATCCAAATGAACCGTGGGTGATTTGCTCTGTATCTGAGGACAACATCATGCAAGTGTGGCAGATGGCAGAGAACATCTACAATGATGAGGACCCAGAGGGGGCAGCAGACACTGAGGTTCAGGGATAAAGCTGCTCTTTACACCACCCCACTCTCAGCATAAGGCAAAACTCTTCTAAAAACTGTCCGTCTACACACAAGTGAAGAACTTAAGTGCTCTCCCCCTAAGTAATGGAAATGGAGTAATTGACTATTTCCCCACCAGGCATTTTCTACTACTATGTTAATAGAGTATTTTTCTAAGAAAAATGTCAGTTGATCATTGGTCAATATCAGAATGAGACACACAAACCTTCTTATCCCTTCCCACAAGTGTCTCATGAAGATTTCCTTGCAGGTTAAGTATACTTAAAAGTATCACTTAATATCAGAAGTGTGTATACAGGTGTGTAGTATATTGTGACCAGAGTGCAGTGGTGCAATGTTGACGTTCagtagattatttttttttctttttttttttttttttaacttgtccTACAAATTCATTTTCCCATTTAAGTACTGGATAGATGTATCAATAACTTAAGCTCTTGTGTACTCTTTTTACTTTGAGCTTCACGTATGAGTCAGGTGgtgtttaatgtctttttaatattGTGACTTTTCAATGTTTTTCTCCTGTATGTCCATACCGTTGTACAGAACATTATGaataaactgtttttgttgataa

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0035098 ESC/E(Z) complex cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194226 lncRNA downstream 75564 8353533 ~ 8355117 (-) True G131511
TU194223 lncRNA downstream 147240 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 147857 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 150421 8279994 ~ 8280260 (-) True G131506
TU194216 lncRNA downstream 181454 8248821 ~ 8249227 (-) True G131501
TU194405 lncRNA upstream 106086 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA upstream 116823 8551961 ~ 8555592 (-) True G131654
TU194433 lncRNA upstream 204290 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 223021 8658159 ~ 8659014 (-) False tdp2b
TU194440 lncRNA upstream 289368 8724506 ~ 8775727 (-) False hey1
XM_043217433.1 mRNA downstream 17847 8377097 ~ 8412834 (-) False kiaa1522
XM_043217432.1 mRNA downstream 17848 8376208 ~ 8412833 (-) False kiaa1522
XM_043217431.1 mRNA downstream 17849 8376208 ~ 8412832 (-) True kiaa1522
XM_043217430.1 mRNA downstream 17850 8376208 ~ 8412831 (-) False kiaa1522
XM_043217434.1 mRNA downstream 31097 8376208 ~ 8399584 (-) False kiaa1522
XM_043218510.1 mRNA upstream 1153 8436291 ~ 8449744 (-) False bzw2
XM_043218511.1 mRNA upstream 1153 8436291 ~ 8447255 (-) True bzw2
XM_043218142.1 mRNA upstream 121762 8556900 ~ 8559488 (-) True arl4ab
XM_043218572.1 mRNA upstream 126239 8561377 ~ 8569332 (-) True scin
XM_043217458.1 mRNA upstream 142128 8577266 ~ 8581347 (-) True tmem106bb
XR_006247071.1 other downstream 109780 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 109796 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 301411 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 301423 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 825538 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 292121 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 316231 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 873582 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1224757 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1872820 10307958 ~ 10311928 (-) False elp2

Expression Profile