RNA id: XM_043218161.1


Basic Information

Item Value
RNA id XM_043218161.1
length 7419
RNA type mRNA
GC content 0.46
exon number 12
gene id dlgap3
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1116971 ~ 1248823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACAGAGGGAATCCTGAGCGCCGCTGTCAGGATCTCAAACAGAGGCGAGTAACGGACCGTCCGCACGCGCAACGAGCCCGGAGGAATATTGAATAGCTATTACCAATACGGGAATGCGAGTCTGACCCGCTAACTTAAACGCAAGaTTGTCGAGTGGAATCTGCGAGGGTCTGCAGACAACAgaagtgtgtagtgtgtgtctATTGAAGAGACCGTTTCCCCTCTGCTGATAATGAAGCACCATTTCCACATGAGGAGGCATTGACTTCGGCGCAACCCTGTCGCGCCCACAGCGCCCCCTCTCGGCCCGGACGGCCCACCATGCCCCGGCCATGAAGGGGTACCAGGTGAGTCGCAGTTTGTCGCAACACTCCTCTGGGCCTTGCTACTGCATGCCTGAGGATTGCGACACTGCACGGGACTATATGCACCACCCCGACCACTACCAGGGGCACAATGACCACCCCTACTACCCACCTGGTGGTCCCCCTGAACCGTTGGCCATGGTCCCATCTGGTGGGGGCACCTTCCCTCGTTCACACCCCAGTCAGCCACAGCCCTATGACTCCACCTGTGAAGAGTGTATATCCTCTGCAGGGCATGGGCATGGTCACGGGGCAAAGATGCACCGTATCCCACCAAACCTTCTGGATCAGTTTGAGAAACAGTTGCCATTTCATCCGGATGGCTTCCATACCCTGCAGTACCAACGCGCAGCCAGCGGGGAACAACGCAGCGAGAGTCCAAGTCGCATAAGGCATCTGGTGAACTCCGTTCAACGCCTCTTCGCCAAGTCACATTCACTGGAGGCACCCTCTAAACGAGAGTTTAATGGCACCCGTGGGGGAGAGTACCGGGACAGAGATAGAGGGCACCGCAGTGGTGGCGAAGAAAGCGGCGGACATCATTATTCAGGAACGCACCAGTCTCGTTCAGCCCGTCGGAACAAAAGCCGAGAACGAAGCAAGAGTGGAGATTCCCGCCACGAATCTCGAAGCTCCCGCCACCGCAGCAAAACAGCTGGATGGTGGAGCTCTGATGACAACCTGGACAGTGACAGCAGCTTTCTGGTGGGTGCAGGTAGAGGGGGGCGAGGGTATCCCACCGGGCACGAGACCTTGGATGCTGCCATCCAGGAGCTTACTTTGAGGAAATCTAAGGGGCCACCTCCAGGAGAGTGCCTGGCTTGTACCAACATAGCCATGGCAGGAGACAGTGGACACTCTCTGAAGAGGAGCACGTGGTCGGCCATGACGGTCAGTCAGGCTAGAGAGGTCTATCCATCTTCTCGTGGAGGAGGGGGAGGGGGAGGTGGATATGAGAAAGCATTGGTTCCTCTAGAACCCAAAATGAAAGAACGATCACTCCACTATCTGCAGGTTCCCTCAGATGACTGGTGCGGTGGTGGTCCATCTGACAGTGGTGGGGAGATCCCTTGCAGACGTATGCGCAGTGGCAGCTACATCAAGGCCATGGGGGATGATGACAGCGCTGACTCAGACACCAGTCCCAAAGCCTCACCCAAATCAGCCCTCATTGCCCAGAGAGAAGCCTTCCGCCGCTCCGTCAGCATGGACCAGCGCTCTTCCGCCACATCTAAGTACTCATGTAAACAGTGTATAGACGTCTACCCAAACAGTCGAACCACTCCTAAAGGCCACGCTCGCTCTCGCAGCGCCACACGCTCTCTGACCAGCGCTCAGCTGAGTGACACTCTGAACCTGTTTGGAGAAATGGAATCACAGGCTGTAGAGGCACTGGACCTACCCGGATGCTTCCGCACTCGCAGTCACAGCTACGTACGGGCTATCCAAGCCGGCTGCTCCCAGGACGATGACTGCCTGTCTGTCTTTTCCATGTCGGGCCCACAGGGAAGCGTGAAGGGCGAAGCAGTGTTCCCATACAGAAAAGGACCCCCTCCTCTTCCCCCTCGCATGTCCAAGCCAATGATCTCCGTGACCGCTCAGAGCAGCACTGAGTCCACTCAGGACGCCTACTTCCAAAATACAGGACAGCCCGCTCTGGTCCGACCCAGACAGCATAGCAACTCAGTGGACCTGACGGAGAGCAGCGGGGGTCGTAGCTCCAGAGTTGGGCACTATCTTGGCGGGGGCACTGCTCGTGTCAGACAGAGCAGCAACTCCGCAGAGAGTCTGAACGGCAGGGCCCTTCAGAGCATCGCCTACCCTGGTGGACCTGGTCCAATGAAACCGAAACACAGCAGCTCAGCTGATAACCTTCTGGAGGGGCCCAGGGGAACTAGGGACCGAGTTGGAGGCAGCCTGGGAAAATCAGCCTCTCTGCCCCAGAACAGTATGTCCCTAGCCAAAGCTCTGGCTGGAGGAGAGGAGTTCAAACAGGAAGGACGAGGGAGAAAGTGGAGACCCTCTATTGCAGTGCAGGTGGACAGCTCAGAGACGTTGTCTGACTCGGACCCAGAAGGCAAAGCTCTGAGAGAGGTGCACTCCATAGGGGTTCAGGTGGAGGATGACAAGAGacgAGCCCGTTTTAAACGCTCCAACAGCGTGACAGCAAGTGTCCAGGCCGATCTTGAGACGGAGGGTTTTGGTGGGCTGACAGTACCCACTCAAGACAAGGGTCTGCAGTTTGGCTGCTCATTCCAGCGCCACTCTTCTGAACCAGAATCAGCCGGTCAGTTTGCAGAGTATCGCACAGTGCACACACAGGGCCAGTGGGCCTACCGTGAGGATTACCATAGCGGTTACACCAATGAGCCTGGCCCTCCAGAACTGAGGGCCCTGCCCCGCTCCCACTCCCCTCTGCCCCTGGCCCCTGAGCGTGGAGTGGGAGGCTGGAGCGAGGGCCCGAGGAGCCTACCCGATTCGGGCCGAGCCTCGCCCTGCTTACGAGATGGAGAGTTCTTCCTGCGGCTCCTACAGACAGAAGTGGAGAGGATGGAGGGATGGTGCCAGAACAtggagagagaggcagagacaaATGAACTGTCGGAAGAGGTGTTGGAGCTCATCAGAGGGGCTGTAGGCAGTGCTCAGATGCTAATGTCACAAAGAGTCCAGCAGTTCTTCAGGATGTGCCAACAGAGTGTGGATCCTTCATCATACCCTCAGCCCAGCACTCAGGATCTGGCCAGTTTTTGGGACCTCCTCCAGCTAGCCATCGAGGACGTCAGAGTGAAGTTTCAGGACCTCCAGCGGCTGAAGGACTCGGGCTGGAGATTACCTCCTGAGAAGAAGGAGGACAAGAAGGTTCCACCTCCATTACCAAAGAAGCCGGTCGGTGGCGTGACGGGCAGCCTGCGTGCCGACAGCACAACCGAGGCCGGAGGCATGCTGGTGGTCTCGCGAGGACGTAGCGTTCCCGAACGGGAGAAATCGCTGGACGTGGGCGACCGGCAAAAGCTGGAGACACGGCGCAGGCTGCTCCAGACCAAACGCTCAGCCTCTTTCCGTCAGAATTCTGCCACGGAGAGCGCTGACAGCATCGAGATCTACATCACAGAGGCTCAGACGAGACTCTGAGCCGTTCGGACCCCCTTAAAACGACAGGCTCTTCTCTGGCCCTCTGCACAGACGGCCATGTTACAAAGCAGCCAGAGAGCGAGTGCGACTGCTCACTTTAGCGCGGTGGAGAGCTTGAGATGGCTTACTAGTACGCTGCTGGTGTTCGGATGTGAGCTCACacgatttattttcatttttctatttattttcgTTGAGCAAGTGTTATTATTCTCAGAAAAAAGGGCTCAACCAGCACAACCAAGTGTTCCAAGATTGAGACTTTTGTAAGTccgcaaaatatataaaaatgttagaaCTGTTTTAATGAACCACGCCAACACATACGGGTGCAATATCATATATTAAGAGGATCTTatcttgttattttaaataatagaccTTGTTTTGATATAATCTTGGCTGTGTATGTGTTTCTTAATTGATCCCACAGTGTGGCGGACGTAGCCCCTTTCACTGTGACGCGAGCGCCCTCTTGTGGCCAGAGTAGAGCAATGCACCCCGATGTAAATTTGGGCCTGAAACTGAATGTCTTAGCAGTGCAGCAGTAAAACTCCTCGAAGCAACTTTTGCAGTATAgataaatgcctttttttttaaagccagttATCAAATTACCACAGGGATTCATCTCCCGTATAGTGCAATATCACTTCGCATTTGCAGTCAGGCTTCTCAGTGTGAAGACACGTGTCTTAAAAAAAgatgagagaaaaacacacaacagaaaCATTCAAGCTCTGGGGCAACAGCCACGATTCCTGAAATAGGACGGTCTACATGACTCTTCGAAAACAGGGGTGCAGAAGACAATCTTCAATTTCACACATGACCTGCACACTGAAAAACGATCATTCAGAGAGGAGGGGAAGCATCTTGTTCATTTCACCCCCCCTGCCTTTCTTTTTATAACAGACGAAAGCCCTATAACAAGAAATCAATGTAGCTTctacattttgcttttaatttattgctgtttttttccccccagataTTAATCaaaccatttttctttctaGTTCCAGTtctattttctgtatttttcgcTCATGaataattatcttttattttattttgccctTTAAATTTGTTTGAGAAAATAATACGCTTCGGATCTCTCTGTCCGCTTCTCACCAATTGTTAATTTgtggattatttaaaaaaaaaaaatactgtgttaGTTTAGGCGGTGAATTTCGTGCGTTTACGAAAGAAAGGAAACAATTAAACAGAAGTGCGATAGGAAGAATGGATTATGTGTTTGCGTGCATTCAACTTCTCGACTGAGTAAAAAGCTGGAAATAAGATCACACAGTAATTGTTGAAAATTCCATctatttgtttccttttttaatgaaaaacgaTGATTGCATGAATgatcttaatttttttgtttctttgtttgtttttggaaaaagtaaTGGAATAACGGAAACTATTTTATTGGGagatgtatattttataaagtacatttttagattagCAGATAAACATATGTCGTCAAAAgtgatgttaaaatatgttataaagTGTCTAAGAATTTACAAGTTAGGGACGTGACGGCTCTGTGGACAACTCAAACAGAATCGTGTTGTTTTCCTCTCATTTCTTTTGTCAACCTCGAAACAGACTTGCTAAAGACTTTTGACAAAAGAAGAATAGATGGTTGACAGCTACTTGCCATGTTGTCCAtaggcaaaaaaaatataatctgtTTTCTATGTCTTGACTATCTACACGTGCCTAACAGCACTGTGTGtggcttttcttttcttttttttaaattaactattCAGTATTATATTCAATACGAAATATATAACTcacacaatatgtattgttcTAATAAATTGATTTGttacacctgatccagctaataaCCACCTCACACTGGATGTTTCTATGTAACCTGCATGCTTTTATTaatccatgaaaaaaaaaaaaaaattaacaaactcTTCTATCAAAACTGTAGATCTTGATCCACTGTCTGGAAAAAAAGGCAGGAGTATTTatctaattatttataataactacacctacatttctgtatttaaacttgttttgttttttttaatcaattcattatttcaacagttttatttccttttctttttccagtcatttgtacttttttcaTTTACCGTTGCCTACCATCTCTTTTTAGttacgtatttatttatctatttgttttGCTAATACGTTATGGATGACTATCCATCATTTtatgaatacatatttttttaagcttgtgAAAATGGTTGCAACCactattgacttttttttttttttggacgcAGCAAGTCTAATATGACAGAAAAGCACAACAGACTATTTCCTCTTCCACTGTGAAGGACTTCCTGCCTTCTCAAAACACTGAAAGACTATGTACAACATGCTGTTGGGGTTTCCAGTGCGAGAAATAGGATGATCTCTTATCAGGGCCATACGTTTTTGATATACCAACGAAACTTAATTTCGAGCAAGACTGACCACACTTTCCCCCTTTGCAAGCCGCTTGCCTCCTCAGGCACTGAATCAATCTGACACTCGAACGGACTGCTCAGAAAGACTATTTCCATGGCCTTTTTATTCTAATGTAAACGGATCGGTGGAACCCAGTCGAATACCAGATTGAATGGCTGTGTCTCTCGCTACACCAAGTCAAGCTTCCCATGTCAACGCATGACCCGACGGTACGCTGATTGTCGCTTCTCGAGACGTCGTGTGTCTTAATAGGTCAGAACGGATGGCTGAAACTCCGCCATTGCCCGAAAAGTGTTGGCGAAGCCTCTGTATATGCCGTAAACAGATTTAGCTAGAGTAAGTGATGAATATTTCTTCGTAGCACAGAGGAGCTTGTAGCAGTGTGACGTAGACGTTACGTTGGATTCTATAACGCATTACAGATCACTGGAAATTACATGGGTCATAGACTTACAAACAATTactgtgtaattacaaataCCTTCTCACGTTCCGTTGTATtatgtacagtaaatatatcTGTCGCAATTGAAGTcgttattattactattcaaTGGATTGTCGATGATTACtggtattattaataatttcatatataatgaaaaatgttattgcaattaTGACTATGAGAAAATCTATTCTGTATTCTCTAGGGTGTCCGTGTGTAAGGAGCCACCCGATTTAGATTTTATTCTACTGTTTGTAATTGCTGCTAATGTAGAAAATAGCCCTGTGGAACATGAgacaaatgagaaaaataaccGCTAACGTTAGGCCCGTCTCTTCTAGCAGTTTCGCGCAGGTCTGCAAGATCACAGGAAACGTCAAACGAACATGTAGGTCTGAAGAAtgagttttcaaaaaaaaaagaagatatatatacatataaatgtttgGCCAGTTTGTgatgtagcaaaaaaaaaaaaaatgtttttttttttttattgttcattatgTTATGCTCATAACATTGTGGAAAATTTGATTATTAACATTATCACTATTTAtggttgtcatttatttattttttaaatcatgtatgTTTGATACAGTGCCaaggtaaaaaataattttgtatctGTGCTTTTTACATCGTTTTACCAAACTGCAATAGCTTACAACttcacctttttttgttttttttcccccaatatATTATTTCCggatttgaaataaatctgaatcTCTTACCATGTGTTGCGGCTAAAGGGTCTAGGCCTTATGATGAACAATGGCACAGCTGAGGTAAAATACGTGGatcatgtttagttttttggtcACGATGTGAGATGTACGGCTCAATGTCTAATAGCATTAAATCAGAGATGGCACACTGTGATGTGGTAAACCTAAACACAGAATGTAATATTGTCAACGGttgtaaacattttctaaaaattacTATAAAGCTATTTTAGCAAGGTAAAATAA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191502 lncRNA downstream 64910 1051508 ~ 1052061 (-) False thsd7aa
XR_006247109.1 lncRNA downstream 222073 863289 ~ 894898 (-) True LOC122324168
TU191441 lncRNA downstream 394660 719320 ~ 722311 (-) True G129635
TU191421 lncRNA downstream 579168 521875 ~ 537803 (-) True G129618
TU191556 lncRNA upstream 7722 1256545 ~ 1258314 (-) True G129714
TU191559 lncRNA upstream 23401 1272224 ~ 1272429 (-) True G129717
TU191579 lncRNA upstream 43808 1292631 ~ 1293279 (-) True G129728
TU191582 lncRNA upstream 63363 1312186 ~ 1313269 (-) True G129731
TU191588 lncRNA upstream 249239 1498062 ~ 1498636 (-) True G129737
XM_043217896.1 mRNA downstream 4742 1094990 ~ 1112229 (-) True LOC122323802
XM_043216996.1 mRNA downstream 22068 1072151 ~ 1094903 (-) False LOC122323272
XM_043217895.1 mRNA downstream 64847 1017155 ~ 1052124 (-) True thsd7aa
XM_043217894.1 mRNA downstream 123323 959443 ~ 993648 (-) True LOC122323800
XM_043218235.1 mRNA downstream 161183 922886 ~ 955788 (-) False nxph1
XM_043218224.1 mRNA upstream 30094 1278917 ~ 1280509 (-) True smim12
XM_043218225.1 mRNA upstream 32716 1281539 ~ 1287206 (-) True pef1
XM_043217205.1 mRNA upstream 253472 1502295 ~ 1503733 (-) True LOC122323396
XM_043217467.1 mRNA upstream 372278 1621101 ~ 1626642 (-) True LOC122323557
XM_043217470.1 mRNA upstream 396745 1645568 ~ 1657024 (-) True LOC122323559
XR_006246987.1 other downstream 22068 1072151 ~ 1094903 (-) False LOC122323272
TU191551 other upstream 30089 1278912 ~ 1280462 (-) False smim12
TU191574 other upstream 35064 1283887 ~ 1286640 (-) False pef1
TU191589 other upstream 249865 1498688 ~ 1499406 (-) True G129738
XR_006247127.1 other upstream 1069704 2318527 ~ 2318597 (-) True LOC122324257
XR_006247128.1 other upstream 1070149 2318972 ~ 2319048 (-) True LOC122324258

Expression Profile