RNA id: XM_043218194.1


Basic Information

Item Value
RNA id XM_043218194.1
length 5788
RNA type mRNA
GC content 0.54
exon number 31
gene id ptprua
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2380621 ~ 2564556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTCAGCGGGCAGATCTGGGGTCTGCGCTGCGCGTCTCTGGATGAAACTCAGTGGCGCAGCGGCAGGATATTTACCACTCTCTACCGCACTCGCTGGCGGTGTTTCACCTGCCTTTACCTGCTGGACTAAACGCTGCTATGAACCTGTGCGCTGTTCTGCTGTTCCTCCTCGCCAGGGTCTGCGCGGAAAGTCTGGAGGGGCCAACAGCTGGCTGCACGTTTGAGGAAGACGCCGACCCCAGCCTATGTGAATACAGGCAGGCACAGGAAGATGACTTTGATTGGCAGCTTGTACGGACCTACAGCTGGCCTcacatgacctctgaccttacACGAGGCTCCTACATGCTGGTGAACTCTTCTCAGTATGGTGCGGGACAGCGGGCTCAGCTCATGTTACGTCCGCTGAGTGAGAACGACACACACTGCGTGCAGTTCAGTTATTTTCTGTACAGCCGTGACGGACACAGTCCTGGGGTCCTAACTGTGTATGTGCGCGTAAACGGCGGCTCGCGGGGAAATGCTGTGTGGAATGTGACCGGCTCTCAGGGGCGGCAGTGGCATCAGGTGGAGCTGGCTGTCAGCACCTTCTGGCCCAGCGAGTACCAGATCGTTTTCGAAGCCACAGTCTCGTCGGAGCAGAAGGGTTACATCGGCCTGGACGATATAGTGCTGTTAAACTACCCCTGCTATAAAGTGCCTCATTTCTCCAGACTCGGGGATGTGGAGGTGAACGCAGGACAAAACGCCACTTTTCAGTGCGTGGCGACGGGACGCTCCACCAAGAGCGACCCCTTCCTGATGGAGAGACGGAACGGTGTTCTGATGTCGCCGTATTCAGTGACGTCATCAGTCGGCGAGCGCCGGTTGGTTGCGTGGTTCCAGGTGGGCGGAGCTCAGCGTGGAGAGCAGGATCTGTACCGATGCATCACTCAGTCGACCTACGGAGCCGCCGTGTCCAACTTTGCTGAGCTAATTGTCAgagTCCCGCCCACACCCATAGCTCCGCCCCAGCTGCTCCGCTCTGGCCCCACCTACCTGATCATCCAGCTCAACACCAACTCTATAGTGGGCGACGGGCCGGTGATCCGCAGAGAGATCGTGTACAGGGCCAGCCACTCGCCCTGGTCCGAGACGCACGGAGTCAGCTCACTGACGTATAAAGTCTGGCACCTGGAGCCGGACACGGAATATCGCATCAGTGTCCTCCTCACCCGGCCCGGAGAGGGAGGGACCGGCCCCCCTGGACCCCCGCTGGTCAGCAGGACCAAGTGCGCCGAGCCCATGCGTCCGCTCAGAGGCCTGACGGCGTCGGAGATTCAGTCTCGTCAGCTGCTGCTGCAGTGGGAGCCGGTCGGCTACAACCTGACACGCTGTCACACGTACTCGCTGTCGCTCTGCTACCGCTACTCCACGGCCGCGGGGAGCGGAGCCGCCGGGAATAACGCCACGGTGAGGGAGTGTCTGTCGGTGGAGCGCAACACCTCCCGCTTCACGCTCCGGGACCTGCCTCCGTTCCACGCCGTTCACGTGCGGCTGGCGCTGGCCAATCCTGAGGGCAAGAAAGAGAGCCGGGAGGTTACCTTCCAGACCGAGGAAGACATCCCAGGAGGCATTGCACCTGAATCTTTAACCTTCACCCCGCTGGATGATATGATCTTTCTGAAGTGGGAGGAGCCTTTGGAGCCCAATGGTCTGATCACACAGTATGAGATCAGCTACCAGAGCATCGAATCGTCGGATCCCAGCATTAACGTTCCCGGGCCGCGGCGCACCGTCTCCAAACTAAAGAACGAGACGTATCACATGTTCTCCGGGCTTCACCCCGGCACCACGTACCTGGTATCTGTTCGGGCCCGCACCGCGAAGGGCTTTGGGCAGACCGCCTTGACCGAAATCACCACCAACATCTCAGCACCGACGTTTGATTATGAAGACGTCCCCTCTCCGCTGAGTGAATCTGAGAGCACCATAACTGTACTCCTGCGTCCAGCGCTGGGGAGAGGAGCACCTGTGAGCGCCTATCATGTGGTTGTGGTGGAGGAGGACGGCTCCAGACAGGTGAGGCGGAGGGAGCTGGGTCACATGGAGTGTTTTCCTGCTCCTTCCTCTCATGGGGAGAGTCCCGGAGGAGGTGGAGGGGCAAGCGGTGCTCCGCCTCATTACTACACCGCCGAACTCACACCCAGCAGCTTACCGGAGGCTACACCCTTCACCGTAGGGGACAACCACACCTACAACGGCTACTGGAACACACCACTGGACCCCAGCAAGAACTATCTCATCTACTTCCAGGCCTCCAGCAACTTCAGAGGGGAGACGCGGATCAACTGCATTCGGATCGCTCGTAAAGAGGCCTGCAAGGACCATAAGCGAGCTCTGGAGGTTTCCCAGCATGCTGAAGACATGGGTCTGATCCTGGGGGCCTGCGCCGGGGGGCTGGTTGTTCTCATACTCCTGCTGGGAGCCATCGTTGTTATTGTCAAGAAAGGAAGGGACATCTATTCGTACCCTTACTACCCCAGGAAGAAGGTGAACATAAACAAGGCGGTGATGACATATCGTCAGGAGAAGACGCGTAAGCTGGGGTCGCTGGACTGCAGTACGACGGAGCACAGTACCCTGCAGCAGGACGATCGCACCGCACACACGTTCATGGACTCGCATAACTGCACTACTAGAAATGAGCAGCGCAGCACGGTGAACGAGTCCAGCAGCCTGCTGGGTGGCTCTCCCAGAAGGCACTGCAGGAGGAAGAGCTCTCCGTACCACACAGGGCAGCTGCACCCGGCCGTGAGAGTGGCGGACCTGCTCCAGCACATCAACCAGATGAAGACAGGAGAGGGCTACGGCTTCAAGCAGGAGTACGAGAGTTTTTTCGACGGCTGGGACATAAACGATAAGAAGGACAAGACCAAAGGCCGACACGACACCCTTCTGGGTCAAGACCGCCATCGCGTGAAAATGCATTCTCTCCTGGCCGATCCTAACTCAGACTATGTCAATGCAAACTACATCGATATTCGGATAAACAGGGAAgGGTATCAGCGCTCCAACCATTTCATCGCCACGCAAGGGCCCAAGCAGGACatgatctatgacttctggcgCATGGTTTGGCAGGAGAACTGCTACAGCATCGTGATGATCACCAAACTGGTGGAGGTGGGGAGAATGAAGTGCTGTAAATACTGGCCTGATGACAGTGAGCTCTATGGAGACATCAAAATCACTTTGCTGAAAACAGAAACCCTGGCAGAGTACACCGTACGCACCTTTGCCATGGAGCGGcGGGGTTACCCAGCTAAACATGAAGTCTGTCAGTTCCACTTCACAAACTGGCCGGAGCACGGCGTCCCGTACCATGCTACGGGCCTGCTGGCCTTCCTCCGGCGGGTCAAGGCCTCCACGCCGCCCGACGCTGGCCCTGTGGTGGTCCACTGCAGCATGGGTGCCGGACGCACCGGCTGTTATATCGTTTTGGACGTGATGCTGGATATGGCGGAGTGTGAGGGTGTGGTGGACATTTATAACTGTGTGAAGACGCTCTGCTCACGGCGTATCAACATGAtccagactgagGAGCAGTATATATTCATCCATGATGCCATACTAGAGGCCTGCCTGTGCGGAGAGACCGCCATCCCCATCAGCGAGTTTGCTCTCAGCTATAAGGACATGCTGAGTGTGGATTCTCAGACCAACACCTCTCAACTGAGAGAAGAGTTTCAGACTCTGAACTCTGTGACTCCTCATCTGGATGTGGAGGAGTGCAGCGTGTCTCTGCTGCCCCGTAACCGCGAGAAGAACCGGAGCATGGATGTGCTGCCGCCCGACCGCGCGCTGGCCTTCCTCGTCTCCACCGAAGGCGACGGCAACAACTATATAAATGCCGCACTGATGGACAGCTTCCTGCAGCCTGCCGCGTTCGTGGTGACCCCTCACCCCCTGCCCACCACCACCGCAGACTTCTGGAGACTGGTGTTTGACTACGGCTGTACCTCCATCGTCATGCTTAACCAGCTCAACCAGTCCAACTCAGCCTGGCCCTGTCTGCAGTACTGGCCTGAGACGGGCATGCAACAGTTTGGCCCCATGACAGTGGAGCTGCTCTCCAGATCCACCGATGACAACGTCGTCACTCGCCTATTCAGGGTGACCAACATCACACGGctgcaggaaggtcatctgGTAGTGCGACATTTCCAGTTCCTGCGCTGGTCGGCTTATCGTGAAATCCCAGACTCTAAGAAGGCCTTTCTCAACCTTCTGGCACAAGTGCAGAAGTGGCAGAGGGAGTGCGGCGACGGTCGCACTGTAGTGCACTGCCTGAACGGCGGCGGACGCAGTGGCACTTTCTGCGCCTGCACCATGATAATGGAGATGGTGCACCATCACAACATGGTGGATGTGTTCTACGCCGTCAAGACTCTCCGCAACTCTAAGCCCAACATGGTGGAGTCAATGGAGCAGTACAGGTTCTGCTACGAGCTGGCTCTGGAGTACCTGGACTGCCTGGAGGTCAGATAACACGAGAGCTCCAGACCCGATCGACACCGGCTTCAACCTCTTCACCTTGCCTCCTCTGTTTCCTTTCGCTTGGGTCAATCCAGCCCACTTGAACGAGCCTTCTGTCCTCCAGTGAGAATGCACATCTACACCAAGAGTGGGACTCGGCACATCTCTTTAACCTTCGACCTCTGTTGTCCTCTGTGCACTTTCCGTTTTGACGTTCTCTCCTCCACGACCTTCTGTGCCAGATATTCCTGCCAAACCCGCGAAGGAGTCAATGAGGTTTCAGCAGCTTGGAGATTACGACATGCGTCTCTGATCATGTGACTGGCTCTCTGCCTTACGCACCAAGCAGGAGGAAATCGCTCTGAATAATAACGAAACCATGCAACGACATGGGTGATATTGTGTTTGTACATTTACGTGTATTGTTAAACTCGATCTACTGTACCGATGCACCTGATTTTACCCGAAAGCATACCTTGAATGTAAGAATGCCATGGCTGATGGAGGTTTTCTTTTCATTGAATTATTAAAGGTGATGTGTATAATTGATGTTAATCTCCTATCCCAGCTTCTCATCAAAAGTGTAACACTGTGGCGCTATCAAAACATCGCTCTGTTTGAGCAGCATTGACTCGACCAATGGCGTGAGTTTAGGGCGGGACTGACTTTTTGGCTGAACAGTGACAAACGAGGGGACGTGTTCACGAGCGTTTTTGAAAACGATCTCGCAAATGTTTAGTGATGCTAGTGGTGCAGAAATGagacacttcacctttaaatcTTAAAGTGACACTCTAAAgtggtgagagatgcaaagatGGTATCTGggtttatttcttgttttttttgtgtatatataatatctattttgcaaaaacaaacaaaatgtttctagATGTTGTCTTTAATGTGCCAACTCATTTttgtatgggtgtgtgtgtgtgtgtgtgtgagagagagagagagagagaagaggatcACTCATGGATCTGCATGCCTGTTTCATGTTTCATTGCAATCCATTGTGAGCCGTCTGCTTTGGGTGCCGATGCCCGCTGTCATTGAGtgcagtaaaacaaacaaacggaaAAAAAAGATACGCAActatataaaagaaacaaaaatgctacTATTGGAATACAAGGCAGTCGCCAAAAAGTTGCTTTTTATCTTTGTATTTAttggttgtgttttattttgtaaaaaagaaaaaaaaaataataaaaaaaatgtaacatgaatgaataaaacattccGATGTTCCTTTaa

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191860 lncRNA upstream 1267 2379083 ~ 2379355 (+) True G129947
TU191855 lncRNA upstream 29057 2351298 ~ 2351565 (+) True G129942
TU191849 lncRNA upstream 37383 2343035 ~ 2343239 (+) True G129936
TU191825 lncRNA upstream 115187 2265217 ~ 2265435 (+) True G129916
TU191792 lncRNA upstream 239317 2139892 ~ 2141305 (+) False ppp1r8a
TU191894 lncRNA downstream 163909 2728465 ~ 2734183 (+) True G129974
TU191899 lncRNA downstream 189468 2754024 ~ 2785827 (+) True G129979
TU191939 lncRNA downstream 320915 2885471 ~ 2887604 (+) False LOC122323290
TU191940 lncRNA downstream 328348 2892904 ~ 2893492 (+) False serinc2
TU191946 lncRNA downstream 351389 2915945 ~ 2916411 (+) True G130015
XM_043218125.1 mRNA upstream 39499 2331733 ~ 2341123 (+) True gmeb1
XM_043218123.1 mRNA upstream 39499 2331733 ~ 2341123 (+) False gmeb1
XM_043218444.1 mRNA upstream 52741 2322401 ~ 2327881 (+) True rab42a
XM_043218231.1 mRNA upstream 62589 2311270 ~ 2318033 (+) True ctps1a
XM_043216947.1 mRNA upstream 198895 2153835 ~ 2181727 (+) True foxo6b
XM_043217019.1 mRNA downstream 320857 2885413 ~ 2887628 (+) True LOC122323290
XM_043217923.1 mRNA downstream 325067 2889623 ~ 2893601 (+) True serinc2
XM_043217777.1 mRNA downstream 329988 2894544 ~ 2914709 (+) True hivep3a
XM_043217778.1 mRNA downstream 331606 2896162 ~ 2914709 (+) False hivep3a
XM_043218258.1 mRNA downstream 354812 2919368 ~ 2922019 (+) True edn2
XR_006247126.1 other upstream 50346 2330141 ~ 2330276 (+) True LOC122324256
TU191722 other upstream 407238 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 708281 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1274049 1072151 ~ 1106573 (+) True G129682
TU191918 other downstream 221369 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 325133 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 406131 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 528511 3093067 ~ 3093714 (+) True G130077
TU192216 other downstream 1195311 3759867 ~ 3760985 (+) True G130208

Expression Profile