RNA id: XM_043218206.1


Basic Information

Item Value
RNA id XM_043218206.1
length 3000
RNA type mRNA
GC content 0.47
exon number 3
gene id myclb
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8322649 ~ 8326971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTTTCAGGTGTCCATAGTGAGCGCGAGCCGCGGCTTGAGCAGGGATAACACGGGAGCTATAAAACACGCAGAGAGAAGCGAACTCCTCGCGAAGAAGCGGACCGCAAACTAACGAACACCCTCGCAACTCAACTTAACGGATAGCGCGAGCGCAAGACCGGATTATCCAACGCGCGGCTGACGACGCTTTCTCAACTTGTTGACATGAGAGCTTTTCGTGCAAAACATTTCGCTGGAGCTCGCCGGTGAACCGCAACACCTTATTTTCGCGTCTCAAATGACACGCGACACACCGACTCCCGGCTCTGCGTTACGATCTTGATCTCCGAGGTGGCCACCAATGCCAGGAATCGGCGCAAACGCACCGCGAAATAAGAAGTGGGAGATGGAGGAATACGACCAGTATCAGCACTATTTTTACGACGACCTCAACTTGGACGAGGACTTCTTTTTCAAATCGACCGCACCAAGCGAGGACATTTGGAAGAAATTCGAGCTCGTGCCAACCCCGCCCATGTCGCCCGTCAGGACGCTGGAAGGGACCGCTCCATCTCCAGGGGACAGGCTGGAGTGGATGTCCCAGTTCTTGGGGCAGGACGACGAGCAGGAGGGGCAGTGCGAGCTGAACGCGGAGGAGACTCTGGAGAACTTGAGCTCCATCATCATTCAGGACTGCATGTGGAGCAGTTTCTCCGCCGGCCAGCAGCTGGAGAAAGTTGTGAGCGAGCGCCTGTCCTGCTCGGCGCAGTCGAAACTCTCCGGCAAGGCGCAGTGCGTCCCTGCGGACAGCAGCTTGGCGACAGATTGCGTGGACCCAGCAGCTGTCCTTACCTTCCCTCTGAGCAGCAGCTGCAAGAAACAGGTGTCATCCGGGTCAGAGTCTCGCACCGACTCCTCCGATGACGAAGAAATTGACGTTGTGACGGTGGAGCACAAGCAGAACAAGGCGCGTTTGGTGAACGCCCGTAAACCGGTGACCATCACGGTTCGCGCGGACCCCTATGACCCTTGCATGAAGCGTTTCCACATCTCCATTCACCAGCAGCAGCACAACTACGCCGCCCGCTCTCCCGACAGCTATCCCGAGGAGGAGCCTCCCCGCAAGAAGATCAGGCAAGAGACCTTACAGCCACGGCTGTGCTCCACGCCCCAAACCCCCGAAAGAAAGACGCCCTCACCTTCCCCCTCGGCTCCCACCCCGTCTCAGACTGCCTCCGCTTCTCCAACACACACGTCCTACCACTTCAAATCCCAACCGTCCAGCCCTCAGAGTTCGGACTGCGAGGACACGGACAAGCGGAAGACACACAACTTCTTGGAGCGGAAGAGACGCAACGACCTACGCTCCCGGTTTCTGGCCCTGCGGGATGAGATCCCAGGCCTGGTTGACTGTCCAAAGACGCCCAAAGTTGTGATCTTGACCAAGGCCACAGAATACCTGCGTGCGCTTCACGTCAGCGAAAAACAGAAGACCCAGGAGAAGAAGCAGCTGAAAAACAGGCAGCAGCAGTTACTGCGGAGACTCGCTGAAATGAAACGCGCATAATCCTTCATAGTCCAGCCATATTTTCAATAGAAACCCTGTAGAAGTCCTTGTTtcgttttggttttttttctaaagtggGATATTTAATGGAACGGACTCTGTGTTTTGAGATTAGTTCTTCAGTTTTTGTTCTTTGCACACTTGCCTTCGCAACACGGGGAGACGTACTTGTGGAACTGGTTCAAACATATTCCAAAGAGGGACATTATTTCTGGTTTCCATTTTGAAAATCGAAGATTTATACCATGAATGCGCGTTACCTTAAATTCGTGAAAGCTACGGTATTTGGGGCGGGGGAAGTACCTTTTCATTGAATTCGCATGCCAATTTAGGCATTATTTGAAATGTAGCaatttatatgcatgtgtaaCTGATTTTCTAAATCATCAAACCCCCGTTTCGTGGCGGGATCTTGAATCTATCtgggtaaataaatatatttaagggTCTTTGATCAATGTGACTTCTCCGTTAATAGTGCTTTATCGAAAATTCACCTAAATTAAAGGAGAGCTGTGTGCCCCCATTGCCACACGATGACGGTGTAAGTTTAACAGACAGGAAGTTGCATCACTGTTCCTTTTTGTTACattgtgttctttttttcttttttttgtctgttattgtatattattgttgttatctTGAACATTCAGGACAGTGTCCAGCACAGCCTTGCAGTGTATATTAACTGCGGCATATTCTTTGGACATATGTATATAATTGTAGTGGTGTACAGGACATTGTGTAAAAATACTTGCTCGTGTTTTGAATATGAAAATCAGCACTGTTAATAgactttattttctatttttctgtcAGTTGTCCTAAAACTTGGTTGGCCCACCTGCCTTCCCTAAGAGTATCtcaaagtttatatttttgttaagaaaagtaaaaaaaaaaatcaaaaagttaaataaaacgACACTatcaacatttcattttcatcacTAGCCACTTTATGCTGTTTTCACTGCCTGTTCCTTTTGTGTTCGGAAATTTCTTTGGCTTATTGCTTTTGTGGCAGGAAAGAATTTTGtactaattatattttcttacagaattaattgtatcattgtttgatttctatttaaatataaagttgtaCTGGTGGCATATGCTTGCTCCTCTCCAATCACGACCGTGGTAGTTTGAAGCTTATGCACATGGTCGCTactaatgcaattatttaaaaaaaaataaataaataaaagtaatgttgTACCTTCGGCTTTGAAATTGGCCAAAAGAGCAAAATATGCATAAGCCATCAGTAACccgttgttgttgctttttttttccactttggtCCCTTGTTGTCGGGTGTCATAATGGGAGAATGGCAGCAGCGTTGTCTAAGCACTTTGTGTTCTGTACCTCATAAGCCTATATACATAAActcaaaatttgaaaaaaaaaaaaaccaataaatTCAGTTCAAATCATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09110 LMYC, MYCL; L-myc proto-oncogene protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194223 lncRNA downstream 39208 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 39825 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 42389 8279994 ~ 8280260 (-) True G131506
TU194202 lncRNA downstream 49846 8224819 ~ 8272803 (-) True G131495
TU194226 lncRNA upstream 26562 8353533 ~ 8355117 (-) True G131511
TU194405 lncRNA upstream 214253 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA upstream 224990 8551961 ~ 8555592 (-) True G131654
TU194433 lncRNA upstream 312457 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 331188 8658159 ~ 8659014 (-) False tdp2b
XM_043218008.1 mRNA downstream 1748 8287145 ~ 8320901 (-) False trit1
XM_043218007.1 mRNA downstream 1748 8287150 ~ 8320901 (-) False trit1
XM_043218006.1 mRNA downstream 1748 8287152 ~ 8320901 (-) True trit1
XM_043218467.1 mRNA downstream 106666 8197711 ~ 8215983 (-) True hpcal4
XM_043217582.1 mRNA downstream 126868 8182020 ~ 8195781 (-) False bag6l
XM_043217432.1 mRNA upstream 49237 8376208 ~ 8412833 (-) False kiaa1522
XM_043217431.1 mRNA upstream 49237 8376208 ~ 8412832 (-) True kiaa1522
XM_043217430.1 mRNA upstream 49237 8376208 ~ 8412831 (-) False kiaa1522
XM_043217434.1 mRNA upstream 49237 8376208 ~ 8399584 (-) False kiaa1522
XM_043217435.1 mRNA upstream 49237 8376208 ~ 8381171 (-) False kiaa1522
XR_006247071.1 other downstream 1748 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 1764 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 193379 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 193391 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 717506 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 400288 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 424398 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 981749 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1332924 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1980987 10307958 ~ 10311928 (-) False elp2

Expression Profile