RNA id: XM_043218223.1


Basic Information

Item Value
RNA id XM_043218223.1
length 2013
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC122324040
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18699138 ~ 18701348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGaactttatttttggtttacaAGTCAGTTCAGCTTAGGAAAAGATGCATCTTCTTGTTGTGTCTGTGCTACTGGTGTTAGGTTTTTCTTTCGTCATGACTGAAATTGTGGATTCATTCAGCACATGcagcagtttctttttaaatggacAGCCTCCGGTGATTCCCGGCATTCTGAATAATTTAGTCTCCCAGGATAGCAATCGCTACAAATTAATCtgtcaaaaatatcaaaacgtTTACAGATTTGCAACTGTCTACGACACAACAAACAAGATCCCTGTCTTTTCGGCTTACAGATATACAGGGAGTTATACAGGGAGACCGCATATTCCATGGATGATTGAGCCAGAGCTTGAAACTACAGATGGTACTATGCGTGAACCATGTGTCAATCAGGCCTTCCCAGGAGACTACTGGACACAGACAGCATTGAATCGTGGTCATTTATTTCCCAACGGCCATGCAGCTGATAAAATTACTGCCGAATCTACATTCACACTGACCAATACTGTGCCACAGTATAGCAGCTTTAATGATGGTAGCTGGGGTCAAATGGAGCAAAGAGTTAAAGACACCATGGAGACTCACTGCCGTGACAAGGACAATGCTGATAATATCCTGGCGTATGTGCTGACGGGAGCTGTGCCAAGCCAAGCCAACCTCTTGAATAAAAGAGTCAACATTCCTTCAAACATGTGGACAGTTTTCTGCTGCTATAATCACGGTAGCACTGCATGGATGTCCCAGGCTCACTGGGCTGAAAACAAGGATAGCAACGCGGCAAACACAATCAATTCAAAAACCATGGCAAGATTCCAGGAGTTTATGGGAAATAAATATGGTCCAGGATCCAAGCTGTTCGACGTTGACTGTTAAAGCTTAAAAGAACCAGCAAGAACCATGGAGATCCTTCATAAAATGAATTTCCAGTATCAGTTGTGACCTGATTATGCAGCTGAATGATCTCTGATTCATGCAATGCTTGCCAAAATTTGAAGGCGGTTTGCCACAACACCAATTGCTTCCTGTGCCTTTTGCCATAAATGccaaaaccatttattttactaattattaattaactttcATCTATgcatgtgtaaaaaataaaaataaaaaaaaggaataaaatgacCAAACCAAATTTGACCCAACAATTTTCTGTTCTCTAAAATTAAAGAGACGCACTGGATTGGTCTGAATGATCTAGAAACTGAACGGCATGGTTTGGGTGAATAACTCTCAAAGAAACATGAACAGTAAGAACTCTGcacatgtgatttttttttataacatacatGTTGATCATTGTAGGTTTAGTGACTATTTAgtgaaatgtaacatttagtgAATTTATGACAAACAACcaaagaaataattaaacaatcatccaaaaaagaaagagagctaGAGAGAACTGCTCTGGCAACTTTCAATCTTGGTTTGaggcaaaaaaaagtttatctgtgaaaataaatttaaccCCATCAGTGATACCAATTAAAAGGTCTGTATTGCACAGTATGTACACACAAAACaaggctttttttatttgcttactCGCACGATTTTACAGACGCTGTTTTTACCACAGACGTTGTTTTTGCTCATGGAGGTGAATTTTATAAAAAGCTCTTTTATTTATCCTGTTGAACTTTTATTATGCTTTAGTATCATATATGAAACTGCTGTGGTTATCAGATGACAACTGTGCTTAACAGAAGTTTGACAAGTTTTACacatcattttgcattttgtgctATAACAACTATTTCTGCATATTTCCATTAATAACTCTTTGGCTGATGTATCTCCATCTTTCACATGctaaagtttatatataattattactatttatacgTAAATACATATACTTCTTGtgttgttttgaataaaagcatctgccaaaagtatatataattaGATATTAGCAAAAAACAGCAGCTAGCACtatattaacaaacattattacagtattGTTATCATCTGGAGTGATGGTATTGATTAATATGT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198611 lncRNA downstream 10026 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 112812 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 165638 18533173 ~ 18533500 (-) True G134426
XR_006247108.1 lncRNA downstream 168501 18523200 ~ 18530637 (-) False LOC122324145
TU198672 lncRNA upstream 130884 18832232 ~ 18832849 (-) True G134504
TU198837 lncRNA upstream 346173 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 561370 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 713551 19414899 ~ 19421472 (-) True LOC122323683
TU198957 lncRNA upstream 791187 19492535 ~ 19493032 (-) True G134675
XM_043217303.1 mRNA downstream 2859 18692749 ~ 18696279 (-) False LOC122323462
XM_043217302.1 mRNA downstream 2903 18692749 ~ 18696235 (-) True LOC122323462
XM_043217304.1 mRNA downstream 2903 18693698 ~ 18696235 (-) False LOC122323462
XM_043218282.1 mRNA downstream 7889 18687349 ~ 18691249 (-) True LOC122324083
XM_043218213.1 mRNA downstream 29046 18667490 ~ 18670092 (-) True si:ch211-133n4.6
XM_043218205.1 mRNA upstream 5480 18706828 ~ 18710010 (-) False LOC122324026
XM_043218204.1 mRNA upstream 5480 18706828 ~ 18710010 (-) True LOC122324026
XM_043217243.1 mRNA upstream 10212 18711560 ~ 18718065 (-) True LOC122323424
XM_043218344.1 mRNA upstream 18593 18719941 ~ 18721199 (-) True LOC122324125
XM_043218472.1 mRNA upstream 60644 18761992 ~ 18766675 (-) True edn1
XR_006247044.1 other downstream 511117 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 511118 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 511120 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 687739 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 763702 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 175266 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 226173 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 841434 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 841434 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 969439 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile