RNA id: XM_043218238.1


Basic Information

Item Value
RNA id XM_043218238.1
length 3137
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122324057
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5014807 ~ 5025133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTTACTTGTTTTCATTCCTTCCCATTCCCAAGCCGGCGTCCGTCATTTCAACAGAACACTGTCATCATTGTTCGCTACAGGGTTTTAACCCAGACTTGAATTAATCTCTTATTGGATGGTATAACATGCATTTGCCAAATTGATGTCAATTTTCCTTTTCTTGCAACTTAAAGAAATGTAGATGTCAGTCGGCAGGACtgcaacaaattattattttgattgatCGAGTAACTATAAACAAATCGTATTTATCTTTTAGCTCTCATTCAGTTCTCAGAATTTTTCCAAACGTAATCAGGGAGCTGTGAGAAAGGCACTTCATGATGTTTAAATCCTCCAGTGAGCAAGACACACTTTCTTCTCTAAGAAATTGTTTTTTCACAAAGGCAGTGAAGCCTAAAAACTATGTTTAGgaacattaacatttaagaaaattaactttttttgaaaTTAGAAATTTAGTTTGAACCTCAGTGTCAATTATCCATTatatattgaattttttcatgtgtgttttttttatttatttattttttttagaggctcttaaaagcataaatgtttCTTCGTCTACTGGCCCCAAAACAAGAAGGTGGGCTAAAGTTGGCCTTTGATGATGGGAATAAATATGCCCATTACTTTGTGATGGTCAAATATGCTTAATTTgaaaacaattgaaaataatGACACGGGGcaaaaagtctttaaatggatagttcaaccaaaaataaagaatctgtcatcatttactcaccctcaaggtTTTTGGTTTAAACCTTCTGttgaacaaaaaatgtattatttagaaatatgttGGTAACCCATATAAATGGGTTGGCaaccaataaaataataaataaaacaaaacaaataaaattctgGAAGCCAATGGCTACCATCAGCTGTTTTGTTTACCAACGTCCAATCTTCTTTCGTGGTTTGGCCAGATCTGGAAGGCGACGAAAGCGTCACTATATCGTCACTACTGCCTCCTTAAATAGacttttctatttctttctttgattTTGGCAGGACGTAATTGTATGCGATTGACCCTTGTGCCAGATTCGAGGGGTTTCTTTCGCTGCGGTCAGACAGCGGGGCGGTTTCGTAGCCGTAGACGTACAGTCACAGCCGGCCAGACAATAAAAGTGTGGGTGTTGGCTCGGTGCTTTAGTCTGGTCGTTACGAAGGCGCAGGTGCCTAGCAACTTCCTTCCCCTCCAGGAGTCTGTTGCCTAGGAGATGAGCGGAGGTCACCTGCCATCATCATGCAGTTTATAAGTCACAGATTTCCAGAGGATCACGACCCCACCATTGAGGATGCCTATAAAACACAGATCCGCATAGACGACGAGCCGGCAAACCTGGACATCTTGGACACGGCAGGACAGGCGGAGTTCACAGCCATGCGGGACCAGTACATGCGAGCGGGCGAAGGCTTCATCATCTCGTACTCCATCACGGACCGCCGCAGCTTCCAGGAGGCCCGTCACTTCAAGCAGCTGATCTACCGCGTGCGGCGCACCGTCGACACCCCCGTCGTACTGGTGGGGAACAAGTCTGACCTGGCCCACCTTAGACAGGTGTCTGTAGAGGAGGGCAAGCAGCTGGCCAGGGAGTTCCAGTGCCCGTTTTTCGAGACGTCCGCCGCGTTTCGTTACTACATCGACGAGGTGTTTGCTGCACTGGTGCGTCAGATCCGTCAGCGCGAGGCCGAGATGGTGCGGGGCAGCGAGAGGAAAACCCGCCGCAGCCATTCCTTCTGGAGCCGCCTCAAAGCCCCCTTCCATAAGAAACAGCAGTCCGAGCACTGAGAAGAAGGCTCTCTCAGTCCCATCTCCCTCGGATGGCTTCTGTCTGATTGTCTGCAACGATGCACTCATCCCAATCATTAGACTAAACCCTCGCTCTCATCATTCGGGACGTGGGCTGATTTACTGATATTAGGGATCCAGAAAGACTTAGTAAACCTGACCctagttattatttttctctttttggaCAGCATTATACGTCGCGAAGGTGAACGCTGTACCTCGTATTTTAACCGATGGGAATGAAGAATGAAGATTTGTGGGGGGGTTTTTGAAGTAAGGAGAGGTCGGAGATGTGCATGTTGGAATAAAATGAAGGACGGAGGTGTTTGGGAGAGCTCGTTGCACAGGGCggaaagaaggaaaagaaagtGGCGAGGGTTTGCGGTAGAAATACTAACCTGCCAGTATATGAGTACTGTGAACCATTCCTTTTGTTAGACACATTCACACACCCTTGCTGTAGCAAATCTGTtctttagcttctttttaaaaaaacgtgtgAATAATAACATGTCCGGGTCACATTTCACCCCTAAAGTGTGACctttctattaaatattattgaataaataattaattagatgGGATGCATTGcaaattattttcataactGGAAGCACATTTCCCCCCAAATACTGGGATGTCACAATTATtacttgttttttacatttagatcaTCATTACAGTAGTATTTCAcaacttaatatatttttcattttacagtaatgatttttttttttactttaatgcaaatgtaatagTGGGGTTGCTTTATTGTCATGGAATTTGCtccaaattatataaatacattttattttgacctGAAATATTACCTGGACATGTGCGATTCAGTCAACTAGGATGTATTTGATGAAAACTGAGCTGAATGAACTGGTTGcaaaatacactgtatgaatgaccttttttttgttttttattattattactctttttGCCGAGCAATATTCAGGTCCGACTTTAAGCACATTAATATGCTGACCGACTTGATTATGATTGAAAACGAAATTGTTTCCTTTTTCCACAGGGCCATTTTTATTCCAGTGGTTTCTGCAGTCATTGTGTAGGAAACGAAAGACTACAATGTGGCTCATGATTTCCTCTCACGCACGCTGTGCACTTACTGCGCTTCACGTACATGAATAGAATGTCTGTTCATTTTGGCATTTCATGCAAATTCATGTCATAGTTTTTCTTGtgattattagattttatttttaagcagaaTGGGTTTACtatattttcctttatttattgttatcagAGATTCTCAAATAAAATTCACTTTACCAATCTA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07832 RIT1; Ras-like without CAAX 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192808 lncRNA upstream 27807 4850884 ~ 4989753 (+) True G130612
TU192809 lncRNA upstream 29843 4850884 ~ 4987717 (+) False G130612
TU192802 lncRNA upstream 52827 4828441 ~ 4964733 (+) True LOC122323731
TU192784 lncRNA upstream 58398 4825444 ~ 4959162 (+) False G130599
TU192785 lncRNA upstream 59229 4825444 ~ 4958331 (+) False G130599
XR_006247095.1 lncRNA downstream 5892 5031025 ~ 5039776 (+) True LOC122324049
TU192840 lncRNA downstream 23261 5048394 ~ 5220081 (+) False G130622
TU192838 lncRNA downstream 75658 5100791 ~ 5220081 (+) True G130622
TU192873 lncRNA downstream 201590 5226723 ~ 5227613 (+) False LOC122324077
TU192890 lncRNA downstream 331737 5356870 ~ 5357094 (+) True G130665
XM_043218220.1 mRNA upstream 7451 4990858 ~ 5010109 (+) True LOC122324037
XM_043218573.1 mRNA upstream 143186 4855129 ~ 4874374 (+) True LOC122324248
XM_043217806.1 mRNA upstream 185204 4828418 ~ 4832356 (+) False LOC122323731
XM_043217788.1 mRNA upstream 209026 4781346 ~ 4808534 (+) True eepd1
XM_043217820.1 mRNA upstream 243875 4738838 ~ 4773685 (+) False sept7a
XM_043218372.1 mRNA downstream 695 5025828 ~ 5029875 (+) True pex11b
XM_043216954.1 mRNA downstream 151137 5176270 ~ 5179650 (+) False LOC122323259
XM_043216944.1 mRNA downstream 158443 5183576 ~ 5186131 (+) True LOC122323251
XM_043218272.1 mRNA downstream 199948 5225081 ~ 5228226 (+) True LOC122324077
XM_043218373.1 mRNA downstream 205279 5230412 ~ 5232089 (+) True LOC122324147
TU192812 other upstream 30603 4850592 ~ 4986957 (+) True G130614
TU192811 other upstream 30603 4850611 ~ 4986957 (+) False G130614
TU192810 other upstream 34316 4977885 ~ 4983244 (+) True G130613
TU192832 other upstream 44213 4965451 ~ 4973347 (+) True G130619
TU192829 other upstream 49220 4965310 ~ 4968340 (+) False G130619
TU192857 other downstream 137453 5162586 ~ 5163399 (+) True G130637
TU192837 other downstream 151142 5176275 ~ 5179677 (+) True LOC122323259
TU192862 other downstream 198567 5223700 ~ 5314178 (+) True G130640
TU192863 other downstream 198567 5223700 ~ 5314178 (+) False G130640
XR_006247105.1 other downstream 558372 5583505 ~ 5585655 (+) False LOC122324139

Expression Profile