RNA id: XM_043218254.1


Basic Information

Item Value
RNA id XM_043218254.1
length 1302
RNA type mRNA
GC content 0.36
exon number 3
gene id c19h5orf49
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6767641 ~ 6769745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCGAGGTGTCGCGGTCCGTGGACATCTTACTTCGTCTAAGAGATAAACGTGCAGCTTTTGTAATGGACGTATTGTCTGAAGCGCGGTCCAAACCGCTTTCCACGCTGTCGGTGTTCAGCTTTATACCGCCCAGAAGGACAGAGCCCAAAGAAACGCGCTATTTCAGCTGCAGCCCCAAGGCCCCAGAGAGGTCTCTGTATGACCGCTTACATCAGAGCACTGAGGACTATGATAACAAACTACACCGTGATGACAGAAAACATGCCAAGTCCCGGGGCCTGGATTTCTTCAGTGAGGAATCATCTAGACCAGCGCCCGTTCTGTCCTCGTCTGTGTACGGCCGGTTTTCACCGCTGCAGTACGACTCGGGGAGGAGCTTTGCACGTGTTGCTCACATTCGCTCCGATTTCTACAGTAAGAATGGGATCACTTGGACCGTGGAGGAAGGCTATGGATCTGTGACACCCGTCTAAATGTGTTTCTTACATCTGGTCACATCTGTCACTGCGCATTAGAGTCAATGTCAAAACAAATGTCTGATGCTACAAGCGAAGCAGATTGTTACTAACATCCGtacaatataatatgcattaatcaCAATATTTTGATGTTACAGGAACATGTAACATTTTGATGTAATAGAAACAATGTCAACATGCTCATGTCATAATTCATGCCTAAAAAgagaatacaaaataaaaaatgatgtgaaaaatgtatgaattcattaatattctaaaataattgatATTAATTAGTCCTGTAACTCActcatataaatacaaaaaagaattgtatatttttaaataaaatgactatttaaatacgtatacatttaaatatatgcatctgtatttacatatacataataaatatacacaatatgcacacatatgtaaacaaaaacctttaattttgtttgtgcttcATCATTCAACAGCACAATTTTCTTCTCCAAACAGCCCAAAttctcattataaaatatttcaatatagtACTACAATTATATACAAGAAAACATATGCttcaaaaacagataaaaaaaattatgttaaatgtattttattgtgttagctgtatttttttattctgtaacctaatcaaaataacctaaCTATAGTTTGATTGTGATTAAttagaatgcacaatgaaaaggCATGAGTTTTGAGAACTGTTATTCTTATTTGAAAattaactcttcatatatagACATATGTGCAAGAAAggatatataaaatacactgtGCGCGCAATACATATATAGTTATAGCAAAGTAGTACATTCTCCTATGACttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193522 lncRNA upstream 128412 6638481 ~ 6639229 (+) True G131093
TU193423 lncRNA upstream 357900 6405385 ~ 6409741 (+) True G131016
TU193412 lncRNA upstream 366343 6371835 ~ 6401298 (+) True pdia8
TU193784 lncRNA downstream 186824 6956569 ~ 6956786 (+) True G131241
TU193788 lncRNA downstream 206785 6976530 ~ 6976854 (+) True G131245
TU193792 lncRNA downstream 212205 6981950 ~ 6982175 (+) True G131249
TU193795 lncRNA downstream 244144 7013889 ~ 7014418 (+) True G131252
TU193799 lncRNA downstream 262516 7032261 ~ 7032591 (+) True G131256
XM_043217258.1 mRNA upstream 50656 6704840 ~ 6716985 (+) True atat1
XM_043217383.1 mRNA upstream 71437 6692074 ~ 6696204 (+) False ppp1r11
XM_043217559.1 mRNA upstream 107815 6649299 ~ 6659826 (+) True ddx39b
XM_043217558.1 mRNA upstream 107815 6649360 ~ 6659826 (+) False ddx39b
XM_043217045.1 mRNA upstream 250279 6515100 ~ 6517362 (+) True tnfa
XM_043218245.1 mRNA downstream 89324 6859069 ~ 6877006 (+) True nsun2
XM_043217670.1 mRNA downstream 130890 6900635 ~ 6902329 (+) True med10
XM_043217259.1 mRNA downstream 263838 7033583 ~ 7038126 (+) True irx4b
XM_043217261.1 mRNA downstream 263839 7033584 ~ 7038126 (+) False irx4b
XM_043216936.1 mRNA downstream 273694 7043439 ~ 7044961 (+) True mrpl36
TU193614 other upstream 71437 6692066 ~ 6696204 (+) True ppp1r11
TU193617 other upstream 72185 6691974 ~ 6695456 (+) False ppp1r11
TU193616 other upstream 72185 6692066 ~ 6695456 (+) False ppp1r11
TU193457 other upstream 241561 6519920 ~ 6526080 (+) True G131042
TU193467 other upstream 278881 6463083 ~ 6488760 (+) True G131047
TU193704 other downstream 64124 6833869 ~ 6836858 (+) True G131183
TU193732 other downstream 130915 6900660 ~ 6902398 (+) False med10
TU193813 other downstream 295277 7065022 ~ 7066858 (+) False lpcat1
TU193827 other downstream 464726 7234471 ~ 7254571 (+) False LOC122323953
TU193952 other downstream 681305 7451050 ~ 7454742 (+) True LOC122323847

Expression Profile