RNA id: XM_043218260.1


Basic Information

Item Value
RNA id XM_043218260.1
length 3026
RNA type mRNA
GC content 0.41
exon number 7
gene id rragcb
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 19081572 ~ 19088783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATCAGCTTCCCGTTTGTTTGTGTTCATGCAGCAAGCTAACAGCTTCCCACTATGAAACCTCCTCATCTGTATCCGAACTAAACCTGTAATCCACACAGACCCCACATCAATCACTCAAACAGAGCCTGCAGAGTCCACCCAGACAGATCAGAGAGGTCCAAAGCTTTAAAAACGGGCTCATAATGTCGATCGAGTACGAGGAGCAGCTAGCCGGAAGCCTGGTGGACTCTTTCCCTAAAGACTTCGGCTACGGCGTGGAAAACATGGATATGATGCAGGAAAACCTGGAAAACTCGCCGTCTGCGGACAATAAACCCAGGATCCTGCTGATGGGACTGAGGCGCAGCGGGAAATCCTCCATCCAGAAGGTGGTGTTTCATAAGATGTCCCCAAACGAGACGCTCTTCCTGGAGAGCACCAACAAGATCTACAAGGACGATATCTCTGGCAGCTCCTTCGTGAACTTTCACATATGGGACTTTCCGGGGCAGGTGGACTTTTTCGACCCCACTTTCGATTACGAGATGATTTTTAGGGGCACCGGCGCATTGATTTTCGTCATTGATGCTCAGGATGACTATGTAGAAGCTTTAGGCCGGCTACATCTGACGGTGTCTCGGGCGTTCAGGGTGAACCCGGAGATCAATTTCGAGGTGTTTATACACAAAGTGGATGGCTTATCGGACGATCATAAGATAGAGACGCAGAGAGACATTCATCAGAGGGCTAACGATGATCTAGCTGACGCCAGTCTGGAAAAGCTTCACCTCAGTTTCTATCTCACCAGCATCTATGACCACTCCATATTCGAGGCCTTTAGTAAGGTGGTCCAGAAACTCATCCCTCAACTTCCCACTCTGGAAAACCTCCTCAACATATTCATTTCTAATTCTGGGATTGAGAAAGCGTTCCTGTTCGATGTGGTCAGTAAGATCTACATCGCCACGGACAGCTCTCCAGTGGACATGCAGTCATACGAGCTCTGCTGTGATATGATCGATGTCGTTATTGATGTCTCGTGCATTTACGGCCTAAAAGACGACAGCAATGGAAACGCTTATGATAAAGAGTCTCTGGCCATCATAAAGCTGAACAACACCACAGTGCTTTACCTGAAGGAGGTCACCAGGTTCCTGGCTCTGGTCTGCATCCTGAGAGAAGAAAGCTTTGAGAGAAAAGGTTTAATAGACTATAACTTCCACTGCTTTCGAAAGGCCATTCACGAGGTATTCGAGGTGAGCAGCTCCACCCAGAGGACGGGAGCGGCGGTGCAGTCCAGCCctcccagcagcagcagcggcaaCGGCCTGGCCCGACTCAAATCTGCAGCGCTGAACGGTACACCCAGGAGCCTGGTTTAACCCAGGACACACGGACCTCTAAGAACACAGGGCCTTCACACTAGTGCACCGAACGTGCGCTAACGTACACGTGAGATTACTGGAGTGTTTCTCTACTTATACCTGCTGTTCCAGGACCTGAGAGACACAACGGGACACTCATACAGGACAGACTACATTGCtgcttttttatgatattttgatgtgtgtgtgagagagcgagagagagagagattatgtGCAGATTCAGCATCAGTTGTTATAATGGGGTAAATGGATAAACTTTAGCCAACAGAATGAGGCACAATGAAACGTTTAAGTGTCACTCTGAGCAAATATAGTCTCAAAACTAGTGAGGTTTATATCGTTATGCATTTATGGTGGCCAAAAGTGCTGTCTAGGCAGGGCGTTCAGTTTTGAGACGCATTCCACCTTTCAGTTTGAAGTTTGAGGACGGATTTTAcggaaaaaaacatgtttaggtgacattttgcaaataaatgaataaatgaattctgAAATTATGCCTATTTGTAGgagctttaaaatgtttacattgcgataaaacacattttacccAAATTCTCATTGCCATAATAGGTCAGAAatgtttactattattttattttttgtaattaccaatattcactttttttttttctagattgttgttactttaatgcagtatttaaattttgtcactgtaaaaaataagtataagCTTTGTATGATAATTACTATGTAAATCcgtaccatttaaaataatatattttgtcacatttttaaagatttttttttttgcattacagtaataagAATTTGGGTGGcatgtacttacattttataaaaaatactgtcacaatgtaaaattttaaatttaaaaataggtttaattttctttaaagcaatatttccaatttctttcttttgattttggggtgaaataatACCCGGACGTGTAAAAATTCCCAGGCCGAACAGTCTTTAAGATTCCAGTTGTTAATGTTGGCCTGTGCTGTGTTTGGCTGCCGCTGTTATTTATTCccgacttaaaaaaaaaagggaaaaaataaaggGAAAAGGCTATATTTGTGAACATCGTCGTGTCTCTGTGAACTGCCTTACGCTGAAAAGAATCACGtacagagactttttttttccttcagcgTGTTTATTTTCCTGCAAAGTGATCccttgttttaatttgaaatgaatctGGGAATAAGTATCGACCCAGACATGCCATGAAATGCTTCTTGAAAAATTCTGATATGCTGAGAACACGGAATAATGACACTCATGATTGTTGAACGAGCTATTAAAGGTGTAGCGTTTTCATATGTGAAGTCCAAAATAACCCtctttcctttctttatttcatgattcattattttattcattctcaAAAATTCCCCTTTCTTGAATGGATATAACGAGGGctcgtgcgtgtgtgtgtgtctgcaagAGACTTATTCAAGTGTGATTGTGTTGAATGATAATTGTTAGtgattggtgtgtgtgtgtgtgttcctttcttttttctaataAAGTGTAAAAGAATAAGATATTAATTTTTGTGATTGAAAAGATTATTACTTGTAAGATatcaagaaaatgaaaattgtttacTTATGGTATATTTTGTCTCAGAGCACGCTGATAAATTAAAGCTATATTCATTTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198837 lncRNA downstream 23609 19047521 ~ 19057963 (-) True G134592
TU198672 lncRNA downstream 248723 18832232 ~ 18832849 (-) True G134504
TU198611 lncRNA downstream 392460 18688913 ~ 18689112 (-) False LOC122324083
TU198549 lncRNA downstream 495246 18572068 ~ 18586326 (-) True G134428
TU198546 lncRNA downstream 548072 18533173 ~ 18533500 (-) True G134426
TU198898 lncRNA upstream 173935 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 326116 19414899 ~ 19421472 (-) True LOC122323683
TU198957 lncRNA upstream 403752 19492535 ~ 19493032 (-) True G134675
XR_006247104.1 lncRNA upstream 409171 19497954 ~ 19528703 (-) True LOC122324126
TU199084 lncRNA upstream 757113 19845896 ~ 19846359 (-) True G134758
XM_043217572.1 mRNA downstream 895 19063845 ~ 19080677 (-) False fhl3b
XM_043217571.1 mRNA downstream 906 19063845 ~ 19080666 (-) True fhl3b
XM_043218354.1 mRNA downstream 47268 19029360 ~ 19034304 (-) True stpg1
XM_043218112.1 mRNA downstream 56237 18990232 ~ 19025335 (-) False LOC122323972
XM_043217334.1 mRNA upstream 291995 19380778 ~ 19408652 (-) True LOC122323475
XM_043217160.1 mRNA upstream 458431 19547214 ~ 19652803 (-) True khdrbs3
XM_043218178.1 mRNA upstream 597392 19686175 ~ 19688386 (-) False LOC122324012
XM_043218176.1 mRNA upstream 615013 19703796 ~ 19714904 (-) True st3gal1
XM_043218173.1 mRNA upstream 619022 19707805 ~ 19714904 (-) False st3gal1
TU198770 other downstream 148433 18876614 ~ 18933139 (-) False smim13
TU198769 other downstream 148433 18927521 ~ 18933139 (-) False smim13
XR_006247044.1 other downstream 893551 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006246998.1 other upstream 453999 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 453999 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 582004 19670787 ~ 19688386 (-) False LOC122324012
XR_006247086.1 other upstream 597392 19686175 ~ 19688386 (-) True LOC122324012
TU199303 other upstream 1293237 20382020 ~ 20382727 (-) True G134895

Expression Profile