RNA id: XM_043218276.1


Basic Information

Item Value
RNA id XM_043218276.1
length 2039
RNA type mRNA
GC content 0.53
exon number 9
gene id seh1l
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4378514 ~ 4387615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGATAAAGCAGCGAGCGACGGTTTCAGTAAAGAAACATGGCACCGGTAGAGTTCACGGTTTCTGCTGAAGTTTAACCGAACAGCCCTCTGCTCTTTTATTAACCGAGTTGTGCGAGAGGGTTTCTCTGTTAAGAAGCAGCTTGGACGATGTTCGTCGCGAAAAGCATCGCGGCGGATCATAAAGATCTGATTCACGATGTTTCTTATGACTTTCACGGTCGGAGGATGGCGACCTGCTCCAGCGATCAGAGCGTCAAGGTCTGGGACAAAGGGGACGATGGAGAATGGCATTGTACTGCTAGCTGGAAGacTCACAGTGGCTCGGTGTGGAGGGTGACGTGGGCTCACCCTGAGTTTGGTCAGGTGCTGGCGTCTTGCTCCTTTGACCGCACCGCAGCTGTGTGGGAAGAGATCGTCGGGGAATCCAACGACAAGCAGCGGGGGCAAAGCCACTGGATCAAGAGGACCACGCTGGTGGACAGTCGGACGTCGGTGACCGACGTGAAGTTTGCGCCGAAGCACATGGGCCTGATGCTGACCACCTGCTCCGCGGACGGCGTGGTGCGCATCTACGAGGCCCCCGACGTGATGAACCTCAGCCAGTGGTCTCTGCAGCACGAGATCTCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTCCAGTTCCCGAGCTCATCCTCCGATGATCGCCGTGGGCAGTGACGACGGCAGCGTCACCTACAGTGGCAAAGTGCAAATCTATGAGTACAACGAAAACACCAGGAAGTACGCCAAAGCGGAGACGCTGATGACCGTGACCGAGCCGGTTCACGACATCTCCTTCGCTCCTAATCTGGGGAGATCCTTCCACGTGCTGGCCATAGCCACCAAAGACGTCCGTGTTTTCAAGCTTGTACCTTTAAGgAGAGAGAGCGTCAGCAGCTCTGGTCCCACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGTCACAACTCTCAGGTGTGGCGCGTGAGCTGGAACATCACCAGCACTCTTCTGGCCTCCTCTGGAGACGACGGATGTGTGCGGCTCTGGAAAGCTAACTACATGGATAACTGGAAGTGCACGGGGATCCTGAGAGGAGACGGCAGCCCGGTGAACGGCTCTTCTGGACACGCTGCGGCTCTGAGCGCGGCCGGCGTCCCTGGAGCCGCTCAGATGGTCGCCGGGGCCGCTTCTGCTGGCAGGTACTTCTTCCCTCACCTGGACTCCCCTCGAGCCGGATCTCGCCTGGCCCACCTCCTGCCTCCCCCCTTCCTCATCGAGCAAATGTACGAGTCTGACCCGTCCCACGCTCCCCAGCTCCGCCAGCGACACACGGCCACCTCCAGCCATCAAGCCCCCGAACACGACTGAGCACGACCCACACCGACCCGCTTCACGGCTCACCGAACGTGCCTTTCTCGTGTCCAGGGCGCAGGTTACCCTAAAAGAGGGAAATGATAATAAATCGGTAACACTTCACGATAAGGTGTCACCTGTTAACATGGACAAGCAATGAGCGGAACATTAATTacagcattcattcatttttgttgtcGCTAGTTACATTGTTTATTCGTGTTAGTACGCAGTGCGTTAACTTTAGCAAACGCAACTcgatattgattttaataaacgctgaaattagcattaaggAAGATTATTCCGCGGTCTGTCTGAATActggcttctgattggctggcggGTATGCAGTAAAACCGATTAATGCACAGGTAGTTACAGGTCCATAATGATGCGCTGCTTTAAttgataaacacaaacacactctctctctctcacacacacacacacacacacacacacacacacacacacacaaacttctcAACGCtactgttattaataaaatagcctaGAGATACCAGCTCGCCACTTTATATTTCTCAGCAACGAGGTAATTAAACACAGCTTGACTGTTTAGGCCGCACACACAGTTGCACTTCTCTTAATTTTCACAAACGGTATGGTTCATTCAAATAAACGCGATCTTACCGCACTGTTTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192614 lncRNA downstream 78188 4298509 ~ 4300326 (-) True G130465
TU192611 lncRNA downstream 90644 4287488 ~ 4287870 (-) True G130463
TU192607 lncRNA downstream 111090 4267179 ~ 4267424 (-) True G130459
XR_006247013.1 lncRNA downstream 146134 4230499 ~ 4232380 (-) False LOC122323452
XR_006247040.1 lncRNA upstream 16402 4404017 ~ 4405900 (-) True LOC122323668
TU192654 lncRNA upstream 20579 4408194 ~ 4408394 (-) True G130494
TU192638 lncRNA upstream 82144 4469759 ~ 4484396 (-) True G130482
TU192630 lncRNA upstream 102645 4490260 ~ 4491487 (-) True G130476
TU192692 lncRNA upstream 152654 4540269 ~ 4541591 (-) False polr2k
XM_043218106.1 mRNA downstream 2154 4303415 ~ 4376360 (-) False ldlrad4a
XM_043218105.1 mRNA downstream 2154 4303415 ~ 4376360 (-) True ldlrad4a
XM_043218107.1 mRNA downstream 52626 4303415 ~ 4325888 (-) False ldlrad4a
XM_043218103.1 mRNA downstream 81757 4285292 ~ 4296757 (-) True rnmt
XM_043218104.1 mRNA downstream 111376 4244693 ~ 4267138 (-) True mc5ra
XM_043217673.1 mRNA upstream 21118 4408733 ~ 4410934 (-) True psmg2
XM_043217825.1 mRNA upstream 44528 4432143 ~ 4450461 (-) True grhl2b
XM_043218357.1 mRNA upstream 141909 4529524 ~ 4537983 (-) True spag1a
XM_043217762.1 mRNA upstream 152364 4539979 ~ 4541629 (-) True polr2k
XM_043217588.1 mRNA upstream 185833 4573448 ~ 4580921 (-) True adck5
TU192049 other downstream 1228725 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1466911 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 1545558 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 1626944 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 2059141 2319236 ~ 2319373 (-) True LOC122324259
TU192945 other upstream 420482 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 699629 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 699629 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 713206 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 753890 5141505 ~ 5158002 (-) True G130744

Expression Profile