RNA id: XM_043218290.1


Basic Information

Item Value
RNA id XM_043218290.1
length 4670
RNA type mRNA
GC content 0.52
exon number 14
gene id tent4a
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6834886 ~ 6849688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTATCTTGAACGTCTAAAAATCAAACGGGAGATGAGACCAGATAAACCCGCACGCATCGGCACGCCGTTATTCGCGCGCGCCGACGCCGACGCCCACGCGCCCACTGCGGTCTCCGCGCTCTCCTCCGTCCTCGCGCGCGTCAGTCGCTCCGCTCGCGGCGTCCGCCGTCTTCAGGCAGGGCTGTGAATCGAGCCGCGCGTCCCTCGCTTCGGAGCCGCTCAGAAGGGTGGGGTTGCTCGATTGCGCCTGCTCGCGGAGTCCGGGGGGTGTGTGCTGCCCCGATGGTTTAAATCCTACACATGCGTACTGGATTTCGGGGTTCAAGGCGATAGGCTACGCCATATTGGAAACACTGTGTAGTTTAGCTAACAGTTTATCGCTAGCGGGGGAAAAGGGCCACCGATCGATTCCCGTTGGTCGCGGCGCTCGGCACGTCGTTGTTTTTCCCCGTGGTTTCGCGCGGCCCCGTTCGCAGGCCCGTCCTCGCGGTCCGGACCCAAACTTATCCGCTGAACGGGGGGAAAGGCGTTCGTTCGTTTGACAGGGCTGTTAGAAAGACGAGTTGAATGGATCCGAGGGTCGCTTGGATTCAGCCGGAACAGAAAGGTCCCGCGAACGCTTTATGGATGCGTGTGTGGGAGACGTCTCAGGTAAACCGGACTAACACGGGTCAGCACCAgaaccaccaccaccacaaccTCTGTGTCAATTCCCCGGCGTTTGACGCTTACAAGACTGTCGCGTCCAATGCGAACAACGGCGCTAACGTTAAAAACGCCGGCTCTGCGATCTCGAGCGGCGGCGGCTCCGCGGCGCTCTCGTTAAATGGAAACACGGGAGACGGCGAAATGACCCAGAAGAGCGGCTCGGTGGCGGATCCGGCGTCCGGCTGCCCTAAAATAAGGACTACAAGCCCTAATACGATAGCTGGGAATATGAACAAGGGGCACCCGGTTTTTACTTGCAGCGAGAGCGTGCTGAATAACGTCAACCACCATCATCaccctcctcatcctcatctacGGCATTTCCATcaagagcagcagcagcagagttGCATCAAGCGCCACCCGTCCCATCCGGCAGCGGTTCACagccaccaccaccaccaccatcacccGGGCCGGAGGAAAAGCGACAATAAGGCCAGCACCTACGGGATAAACTACCTGATCTCCAACTGCACTAACGGCAATTACGACAACTCCGGCACGCCGTGGAAGACGAGGAAATATAACGCGGGGGTTGACGGGTTGCATGAAGAAATCATGGACTTCTACAATTTCATGTCTCCTCGTCCTGAGGAGACCACAATGAGACAGGAGGTGGTGGACAGGATAGAGTCTGTCATAAAGGAGTTGTGGCCGACCGCCGACGTGCAGATCTTTGGCAGCTTCAGCACTGGACTCTTTCTCCCAACCAGTGACATTGACCTGGTGGTGTTTGGGAAATGGGAGAAACCTCCCCTGCAGCAGCTGGAGCAAGCGCTCAAGAAACACAATGTGGCAGAACCTTATTCCATCAAAGTTCTTGACAAAGCTACGGTACCAATCATCAAATTGACCGATCAGGAGACCGAGGTGAAAGTGGACATCAGTTTTAACGTGGAGACGGGCATCAAAGCTGCTAGCTTCATCAAAGAATATGTGAAGAAGTATACCGTGCTGCCTTATTTAATCTTAGTGCTGAAGCAGTTCCTGCTGCAGCGAGACCTCAACGAAGTCTTCACGGGAGGAATCAGCTCCTACAGTCTCATCCTGATGGTCATCAGCTTCTTACAGTTACACCCAAGAATCGATGCTAGGAATCCCAACATGAACCTTGGCATTCTGCTCATTGAGTTCTTCGAGCTGTATGGAAGGCACTTCAACTACCTGAAGACGGGCATCAGGATAAAGAACGGAGGAGCCTACATGGCTAAAGAGGACATCATGAAGGCCATGAGTAATGGCTACCGGCCCTCCATGCTCTGTATCGAGGACCCTCTTCTTCCAGGTAATGACGTGGGCAGAAGCTCGTATGGTGCCATGCAGGTGAAGGAGACTTTTGACTATGCGTATATAATACTGGGTCACGCCGTTTCACCTCTCGCACGTTCTTACCCCAATAAAGACAGCGACAGCACTTTGGGACGCATAATTAAAGTCACCCAGGAAGTCATCAACTACAGGGAGTGGATCATAAAGAAGTGGGGATGCAGACACAATGCTCGTCTTGAGAGGAGCAAGGGTCCACCTCATAAAGACTCGGTGGAGCAGGTGGAGACGGGCACACTTCTGGGCGTCGGTGTGGAGGACCAGCAGCAGAGGGACTCGGTGTCTCCTCACAGCGCAGACTCCCCCATGTCCCTCTCCAGCCCTCAGCAGCACTCCTCCGCCTCTTCTGCGTCCTCGCTGTCAGGCAGTGATATCGACTCTGACTCCACACCGTATGTCGCTCCACCTGTAGCCCCCTTCCCTCTCCAGATCCTGCCGCCAGGTCCCCTGCCAGCAGCGCTTCAGATGGCCGAGGGCAAAGCCAGCATCACGGCAGCACTCACCATGCCTCCGGCTGCCCAGgcGAGAGTGTCCATCCCAGGCGGTCTTTCTGTCCACGGTCTACCTGGCAGACAGtggaagtcaatgggatcCAGAACTATCATCTTTTGTGTCCCACAGACGACAgacagtcatacaggtttgcaacAACATGGTGACAGGTCCCAAGTTCCCGCTGAAGGGTTTCCACAACCCCGCCGTGGTGCACAGTCCCGTCCTTTCCAACCGAAGCCACATCCAGTACAACCGCAACACCTGGCGCCGCAGGAAGAGAGACAGCCTGCCGGCCAGCGTCAGCAGATAAAGGCGTCGCGCCTGCCCTCCCGAAGCTCCCTGTCCTCTCCTCGCTCCCTCTTCCACCCTTCCGGTCCCGTCTTGAAACGATGAACTCGCTGATGGCGCGAGCACAGAGAGACCAGCGTCTGCAACCCAGCTCCTCGTTCAGTAGTTGTGGTGATGGTGGTGCTAAGTAGTTCAGTCTGCCACTGAATCTCTGCATGTATATGTCGAGTcctttttttgggggttttttcgACCTGTGCAATCTTCCCGAGGAAGCTTCGAGAACAGGAACTGtcgttttcttttgtgttttgatcGTTTACCCCACAACTTCCTTGTTGACAggttaagcttttttttttgtatgtgcgTGCGTCTGTCTGTTTCATGCTCCGTTTTGTGGTTTTCACATTTTCTAAACGTGACACCCTTCACGCGTGGGACGAACTGGATTCAGTGGATTCGaagcgtgtgtgttttgtgtgtgtgtttgttgtatCGGGGTGTATGTCTGTGTAACGCTGGCTATGAATCCTGCACTCGAGATGCTTACAGAGATCCCCACCTTACTGTAACCATCACGCAaacgtttctttctttttttgtgcaataacTTCACTCtggaaacatttaattttttctttcttttttttgtttttgtaaaaacttttatttttgtaatgtttttaatttcgcTCATCGTTTACAGATCCTGTCAGACAGGCTCCTTAAAGGGAAAAAGTctgttttaaaactgtttttgagAGTTTATATTCCCTCTTCTTGGCGTGAGCTGCACCTGGACGAGAGCGAGTTGAACCCGGCCTGCAGGTGTCGCCGTTTCCCAGCTTTGCGTTGAGCTTCAGCGTCTCTGTCGCTTTTATTTGTCTCGTTCATCTGTAAGGTTGTAGTTTTGTGGCATTGAGGCTTTAGGACATGGATTTGACCGAGAACCGACCGACTGAAAAACTCAAGCCCTTAGTCTGTACGcgctttcatttatatatatatatctatatatgtgtgtgtgtgtgtgtgtgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctttttAAATCGCTCTAGGTAAGTGTGAGACGTGAATTATTTTAGGGAAGCTGTCACGACCGTGCGAGCGGACTCCAGATCAGTGCAGCTTTATGCAAGGGGCCCTATCCGGACCTTCTCGACTCTTCTGAGCGGGCTCCCGAATCAGACTATAGCGGAGAAAGGGAATTTATTTTGATTCCTTTCTGGAATCTTGACGTGCATTTATTGCCAGGTACTTGCGCTAATACATGCCTTTTTGGTAATTACCTATTCCCGTACTgtactgtattgtattttttttgggggttctgtttgtatgtatgtggcACACTAAAACTGTATCGCCGTCGCTCAGAACGTCGCAGGCATGCAGGTCACTGTTACTATGCAAGCGGGGTTTTGAAGACCTCTCTTCCCGCGCGTCCCTCGCGCGGCTCGTAAATCTCGTCAAAGCGCGCGCGTCGGAGGACCCCAGGCCCCCGTATGCAAGTCCAGTCCGGTTTCGGAGGAGGAAAAACCGCCGGACGTCTTGTCTGGGggtttttggattattttttttttcctttttgcggAGCGGATATTTTCTCCTGGAGAATAAACCTATTTTACTGCTGTTGCAACACTACAACCATGACTTTCAAGTCCGTATGGGACGACTTTGATTGATTGCCACGAACTTGCGTGACACGTTTTACAAAGTCAGATCCGATGCGGAGACCACGGATTGTCCTTGCGACCCCTGACTCACCCGCCTATCAATGCAATGGGGGCAAATAGCAGTCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193683 lncRNA downstream 74438 6760174 ~ 6760448 (-) True G131166
TU193682 lncRNA downstream 79451 6754414 ~ 6755435 (-) True G131165
TU193673 lncRNA downstream 126821 6706239 ~ 6708065 (-) True LOC122323439
XR_006247005.1 lncRNA downstream 130403 6702483 ~ 6704483 (-) False LOC122323439
TU193728 lncRNA upstream 681 6850369 ~ 6852128 (-) False srd5a1
XR_006247094.1 lncRNA upstream 34274 6883962 ~ 6885443 (-) True LOC122324041
TU193811 lncRNA upstream 193819 7043507 ~ 7044962 (-) True G131265
TU193857 lncRNA upstream 356501 7206189 ~ 7254556 (-) True G131296
TU193873 lncRNA upstream 410607 7260295 ~ 7262610 (-) True G131305
XM_043218252.1 mRNA downstream 13565 6769871 ~ 6821321 (-) False adcy2b
XM_043218253.1 mRNA downstream 13566 6769871 ~ 6821320 (-) False adcy2b
XM_043218251.1 mRNA downstream 13566 6769871 ~ 6821320 (-) True adcy2b
XM_043217947.1 mRNA downstream 69014 6762075 ~ 6765872 (-) True LOC122323845
XM_043217257.1 mRNA downstream 109192 6716739 ~ 6725694 (-) True si:ch211-152p11.4
XM_043217156.1 mRNA upstream 2139 6851827 ~ 6858660 (-) True srd5a1
XM_043217669.1 mRNA upstream 39583 6889271 ~ 6899805 (-) True ube2ql1
XM_043217245.1 mRNA upstream 128127 6977815 ~ 6981426 (-) True irx1b
XM_043216939.1 mRNA upstream 192425 7042113 ~ 7043346 (-) True ndufs6
XM_043218062.1 mRNA upstream 224698 7074386 ~ 7232127 (-) True nrsn1l
XR_006247131.1 other downstream 130949 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 131497 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 185497 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 195666 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 471714 6362347 ~ 6363172 (-) True G131006
TU193894 other upstream 506933 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 545492 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 752445 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 1269261 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 1271824 8121512 ~ 8129258 (-) False khdrbs1b

Expression Profile