RNA id: XM_043218307.1


Basic Information

Item Value
RNA id XM_043218307.1
length 1944
RNA type mRNA
GC content 0.50
exon number 13
gene id sgce
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12497228 ~ 12508605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGGTACATATGTTTTCCATCCCGTCCTCGCTGGATCCCCCTGTAAATATAGCTGTTTTCCAGCATCTGCGCCAGATGTTCCAGCCAACCAGCGCCCATCAGCTTCAGCGAGTGGGAGGAATCCGAGCGGCGGAGGATGATGCTTACGGCTGTCACATCCCGAGGACCACCGGCGACACTTCAAATGTGTGATGTTAACAGCTGCTGCGGCAAATGAACGATGGTCTCGGCTGGCGTTCTCGTGGGGCTCACAGTGGCCGTTATAGTTCGTTCTGTCAGTGGCGCAGACGGACAAACCCGGGCTTTAATCGACTCCAAACAGAGATCTGTGTTTCGGAGTAGCGTGGTCACCATCCTCTCTAAGTCGCACGCCGACCGCAACGTTTATCCCTCTGCTGGAGTTCTTTTCGTTCACGTTCTAGAGAGGGAATACTTTAAAGGAGAGTTCCCACCATACCCAAAAGCAGGTGATTCGAGTAACGACCCCATCACGTTTAACACTAACCTCAAAGGCTTTCCAGACAGGCCTGGATGGCTGCGTTACATTCAAAGAACCCCTCATAGCGACGGAGTCCTCTACGGCTCACCGACCGCTGAGCATGTGGGCAAGCCGACAATCATCGAGATTACCGCGTATAATAAACGCACTTTTGAAACTGCCAGGCACAACTTGGTCATAAACATCATGTCTACTGAAGAATTTCCTCTGCCGTATCAGGCTGAGTTTTTCATCAAGAACATGAACGTTGAGGAGATGTTGGCCAGTGAGGTGCTGGGAGATTTTCTCGGTGCGGTCAAGAACGTCTGGCAACCGGAGAGACTCAACGCCATCAACATCACTTCAGCGCTGGACCGGGGCGGACGAGTGCCATTACCCATCAACGACCTAAAAGAGGGTGTGTATGTGATGGTGGGAGCAGACGTGCAGTTTTCATCGTGCCTTCGAGAGGTGGAGACCCCACAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCCGTCATCAGCTGCGATAAGAAGTTCAGAGCTCAGTTTCACATCGACTGGTGCAAGATCTCTCTGGTGGACATCACTAGGGTTGTTCCTGTGCACAGTAACCGTCCAGACCCGGGCACAGGTGTGCTGCCGGACATCGGCGAGTACAACCCACCTTCTGACTTACTGAGAAGTAGAGATTATTTTGCTGACTTCCTGATCACCCTGGCGGTGCCCTCAGCTGTCGCTCTGGTCCTGTTCATCATCCTCGCCTACTCCATGTGCTGCCGACGGGAAGGGGTggaaaaaagaaacatgcaaaCACCAGATATTCAGCTGGTTCACCACAGCTCCATTCAGAAGTCGACTAAGGAGCTTCGCAGCATGTCCAAGAACCGGGAGATTTCTTGGCCTCTCTCGACGCTGCCAGTCTTCCATCCCGTGAGCGGAGAGGTGGTGCCGCCCATCCATCCCGACAATTTCGAGACCACCAGCATGCCGCTCATGCAGACACAGACAAATCTTCAAAATCAGATCCAAATACCACAGCAGCAGTCCTCTGGAGATAATTATTGTATGTCGACTTTTCGGAGGCTAGAGGTAAATGGTATTCCTGAGGAGAGAAAGGTGGCTGAAGCCCTAAACCTGTGATCTCGCGTGGCTTCACTTTTGTACCCGTTTAATCTTGCCAAACGTGCATGTGTAGCTGTAGCTTCAAGCTCAACGCCTTtgtgttttcatgcacatgTGCGACATCCAAACGTTATTCAGTGTCAGAGCTAATGTTGATGATGAGCACACTAaaagaattctttaaaatactaTCCACAATAAATATGTTGtcaaatgttgaaatattttttagtatGAGCCACTAATGGAGGCGCATTTACAAGTTGATATTGTCTGATTGTTCTCTTATATgagcaaatgtgttttgataaataaattaatacactTGCCACTAAA

Function

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195542 lncRNA downstream 13060 12483616 ~ 12484168 (-) True G132429
TU195541 lncRNA downstream 25398 12468920 ~ 12471830 (-) True G132428
TU195528 lncRNA downstream 44523 12452284 ~ 12452705 (-) True G132417
TU195506 lncRNA downstream 118077 12333451 ~ 12379151 (-) True G132398
TU195460 lncRNA downstream 247805 12248381 ~ 12249423 (-) True G132363
TU195555 lncRNA upstream 2381 12510986 ~ 12511332 (-) True G132436
TU195557 lncRNA upstream 4512 12513117 ~ 12525593 (-) True G132437
TU195559 lncRNA upstream 28593 12537198 ~ 12538694 (-) True G132439
TU195560 lncRNA upstream 32714 12541319 ~ 12541942 (-) True G132440
TU195562 lncRNA upstream 34517 12543122 ~ 12543332 (-) True G132442
XM_043217886.1 mRNA downstream 59143 12435951 ~ 12438085 (-) False bet1
XM_043217873.1 mRNA downstream 74109 12420878 ~ 12423119 (-) True tfpi2
XM_043217858.1 mRNA downstream 81477 12380444 ~ 12415751 (-) False calcr
XM_043217859.1 mRNA downstream 81477 12380444 ~ 12415751 (-) True calcr
XM_043217857.1 mRNA downstream 81478 12380444 ~ 12415750 (-) False calcr
XM_043217771.1 mRNA upstream 50306 12558911 ~ 12568503 (-) False pdk4
XM_043217770.1 mRNA upstream 50306 12558911 ~ 12568499 (-) True pdk4
XM_043217794.1 mRNA upstream 111178 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA upstream 111178 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA upstream 111178 12619783 ~ 12657150 (-) False LOC122323727
TU195513 other downstream 59157 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 664321 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 759746 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1326315 11170270 ~ 11170913 (-) True G132219
TU195128 other downstream 2185300 10307958 ~ 10311928 (-) False elp2
TU195819 other upstream 89169 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 135359 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 158659 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 519212 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 775926 13284531 ~ 13285461 (-) True G132733

Expression Profile