RNA id: XM_043218316.1


Basic Information

Item Value
RNA id XM_043218316.1
length 2833
RNA type mRNA
GC content 0.46
exon number 9
gene id sgo1
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15371304 ~ 15376482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGCTCGCAGCGCACGATTTCGAACATCAACATCCTCGAGGGGAGATACGCCGGAGAACCAACTCACGCGAAATAAACAACTTACGCGCTCTTCGGCGTAAAGCAGCTGTTTATTCATCTTATTATTGTGGCAAATAAGTGGGTAAAGCGTACGCCGTGTTTTGGTTAAGCTTGGCGTGATATGGAGATTAACGTTCACCCGTGAACGGCTGATTTTAACACTGGACTAGTTCGCGAGCAGCCCAGCCATGGTTCGGGAGCGGGTGGTGCAGAAAAAGTCCTTCCAGCAGAGTCTGGACGACATCAAggacaaaatgaaagaaaagagaaacaagCGTCTCGCCAACGCTTTAGCTGCCAGCCGCGGCCTGTCAAAActgaagaacaaaaacacagCTACAGTGAAGCCATTTGTCCTGAAGAGCGTCCAGGTGAATAACAAAGCTCTTGCAGTAGCCCTgcagacagagagggagaaggTACGGCAGGCGCAAGGGGTCATCCTGCAGCTCAAGAAAGAAAGGCAAGCACTCATCTTTCACCTGCTGATGCTGAAGAGGACGCTTAAAGATCGAAGACCTGCTGAAAGTGCCCAGGTTTCTCCCATTGAGACGAGTTCACCAACTCTACCTCAGCCCATCAGTCCTAAAACAGTACACGTGGTTGGGACAGATATCCCTGATCATCACTCAGCAGAACCACCTTTTAATGCAGAGGCTGTTCCAGGTTGTCGCAGCGACCGACAGGTTTCTTTGCCCCCCACAGTAGGAACAAGACGAAAGAGACGCTCCGAGGTTGTGAGGAGACAAAGCTCACGCTTTGACTCTGGCAGGGTCGAGAAATGTGACTCGCTAGATGTGAAAAGTGGAGACGCTATTGATAGCAGACAAGAGGTAGAGACAAACGCACCATTGGAGGAGGTCTGTCATGAGCGGGAAGAGCTTAACAAGGAACAAGCTGGACATAAAACAGGGCCGAACTATGAGTTCAGCCTAGAGGTTTCTGAACTCCCAGCCGTCCAGCACTCGACTCCTGAGCCCCCCCAGCGGCCCACCAGACAGCCCAAGAAGAAACCCACCCAAGCCGCTCCCCGCCCCAAACCAGAGAGGGGACGCAAACCAGACCGAGCGCCGCTAAAGAAACCGTGGGACAACCCCAAACCCCGTGCTCGCTCTAAGAGCCGGGACCGATCTCAGAGTCGTGCGAGAGCAGCGGCGCCTCCGCCTGCCGATCGCCTTAACTCCTCGTTGGGTGGCAATGACACCTTTGACTTCGACTGTGAAGAGGCCATCCATCTAACGCCTTTCAGAGCGGGAGCCAAAGCTGTGGAGAAACCATCGCCTGACGCTCCGGTTAAAAAAGACGAGGTCCTGCCCAGTCCCGTTGCCATGGAGACCAACACCAGCCTCTCAGAAGATGAACAGGACGCAGATGATTCTCCTTATGTACCGAAGAGGAGATCCAGAAGAGCTCGGAGTCCACCGCCCAGACGGGCTCGCTCTAAAAGGCGGTCTGCTCAAGtggcaaaagaaaatattagaCAAAAGCAGGGCCATATTGAAGTAGAGCACATAGAAAAAAGTGGGCCTGAAATGGAAGAAATTGACCTGCATCTCCACGGTGATCTCAACCCAGGCCTTCTGCTTCCATGTTCACCAGTTTGTGTTCTTCCTGAGAatcccagccaatcagaaccaAGCCAGGAGATCTGCCAAGTGCCGTCTTCTGTTGTTCCTTTGGAGTCTCCTGGTGGAGAGGCGGAGCTTATGATGATTGACTGCCCAATATTTGACTTTTCAAAGCACTCTTGCAGCTCACGCGGCCAGGAAAATGAAATGCCCTTGGTCAATAGAGGCAGAAGAAAagCCTATCAGAAGCCCATGTCTGCTCAAAACACCCCTCAAAGCTCCAGTCGTAAGCGCCGCTGTACGAGTACCGTCAACTACAAGGAGCCCTCGATCAACTCgaaacttAGGCGAGGTGATAAATTTACAGACACCCGTTTCCTGCGGTCCCCCATTTTCAAACAGAAGCCCACTTCCCGTCGGAGTTCACTTAAAAAGCTGGAATTATATAACGAGTCTTTTGTGGGTTGTCGCTGAATAACTGATGTAAATAATAGGACCTTTTACCATGATTCAGCTTCATAGAATTACAGTGCTATCTGTCTGAAcctgtgcattattttttttctgcagatttttaACTGCTGTGTAATTGAATTTGTAATTGTTTGACTTTGTGAATTTTAATAAAGttcttttaatttgttgttcccacttaaaattaaacagttacagaaaatgaactgaaaacttTTTATTACACTTGTAGCTGGAAGCAGAggattttaatttaacttgtgTCAAGACCATTCAACTGCCAAGAATCATAAATATTCAGTaagaccattttaaaatgaagcagCTGAGTGTTGGCATGTCGGTCTAAACTGTGTGGTACCAATAAAGTAAAACAAGCTGAAATTGTTTCTCATGTCTAACTGCTTTTCAAGCTTGTTACATTGTGGTAGATAAGTCAGGACCAAACTAAACTTTTGCATTATGTGCATAGCAGACATAGCTTATTTCACCAGCCCAAACTTTAGCACTTCATTTTGTTAATGCTTTTCAGTGAAGAACTggtttaacattattataagtCCATAATTCATTAAGATTTCTTAAAGTTATTCCATTCATGGAATATGAACAAGATTCCTAATTCATGAAACAAAGGTGTTAAGGTTCGATTTAACTACTATCTGTAAATactcaacaaaaaaaccttACTGCTTACAtcataattagctttttttttgtaacatttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196618 lncRNA upstream 58472 15309668 ~ 15312832 (+) False LOC122323314
TU196596 lncRNA upstream 90300 15196057 ~ 15281004 (+) True G133109
XR_006247096.1 lncRNA upstream 335882 15022275 ~ 15035422 (+) True LOC122324050
TU196536 lncRNA upstream 613328 14757624 ~ 14757976 (+) True G133068
TU196330 lncRNA upstream 788888 14175839 ~ 14582416 (+) True G132916
TU196781 lncRNA downstream 83856 15460338 ~ 15460706 (+) True G133253
TU196784 lncRNA downstream 105516 15481998 ~ 15483517 (+) True G133256
TU196793 lncRNA downstream 172362 15548844 ~ 15549137 (+) True G133265
TU196807 lncRNA downstream 206723 15583205 ~ 15606585 (+) True G133276
TU196821 lncRNA downstream 248858 15625340 ~ 15626146 (+) False aste1b
XM_043218332.1 mRNA upstream 10870 15355608 ~ 15360434 (+) False anxa14
XM_043218331.1 mRNA upstream 10870 15355615 ~ 15360434 (+) False anxa14
XM_043217062.1 mRNA upstream 21057 15327667 ~ 15350247 (+) True crybg2
XM_043218343.1 mRNA upstream 51534 15313857 ~ 15319770 (+) True LOC122324124
XM_043217061.1 mRNA upstream 57427 15308727 ~ 15313877 (+) True LOC122323314
XM_043218317.1 mRNA downstream 4155 15380637 ~ 15384405 (+) True LOC122324102
XM_043217082.1 mRNA downstream 12518 15389000 ~ 15398843 (+) True topaz1
XM_043217083.1 mRNA downstream 12519 15389001 ~ 15398843 (+) False topaz1
XM_043218151.1 mRNA downstream 24083 15400565 ~ 15404546 (+) True si:ch1073-376c22.1
XM_043218152.1 mRNA downstream 24088 15400570 ~ 15404546 (+) False si:ch1073-376c22.1
TU196623 other upstream 9459 15356740 ~ 15361845 (+) True anxa14
TU196534 other upstream 158874 14787544 ~ 15212430 (+) True G133066
TU196586 other upstream 183465 15149304 ~ 15187839 (+) False LOC122323518
TU196550 other upstream 533352 14834637 ~ 14837952 (+) False LOC122323257
XR_006247120.1 other upstream 2066160 13305006 ~ 13305144 (+) True LOC122324249
unassigned_transcript_2195 other downstream 2988 15379470 ~ 15379541 (+) True trnap-agg_21
TU196767 other downstream 44653 15421135 ~ 15424492 (+) True cckb
TU196794 other downstream 193182 15569664 ~ 15577981 (+) True G133266
TU196987 other downstream 398775 15775257 ~ 15776674 (+) False hoxa5a
TU197370 other downstream 1309643 16686125 ~ 16692945 (+) True G133626

Expression Profile