RNA id: XM_043218337.1


Basic Information

Item Value
RNA id XM_043218337.1
length 5296
RNA type mRNA
GC content 0.46
exon number 21
gene id setdb1a
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17721000 ~ 17735410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATGGAGACTGTGTCCGCCAACGTGcagatacagtaaaaaattgAACATTGTTTACCACATTGCgcttttagttgttttattgcGGGTTTTTTAGTTTTCCATGCGATGTCAGAGTTGGCGTGCTGTCCATAAAGGCTCTTTATCGGAGTGCTGGCAGTCATTGTGTTTTGCCGATATATACGCGAGCGGAATAGTGTCCGCCATACAATCCTGCAGCTGCGCGCTTTTTGATATGTGAGTGTCTTCGGGATTCAAGTACACTACAGCAGCAGGTCGGGGTACCTGGACATAAGCCATGAGTAGCAGAAAAGATGATGATAACCTCCTGAGAATGACAAAGGATGACCTGCTGCGCTGGatccaggcagaggtggaccaaAACCCTCATCTGATGCAGAGACGCGAACAACTGGCGCAGGTAGAGGACTGGGTGAAGCAGAAGGAGGGGGAAGCCACTTACACCCGCCTTCTGTACAGCAATGCTTGCGAGTCGGTCCTTGAGTGCGAGTCCGTGATGAAGGGTCTTTATGGAATGATGGGACTCGAATACCGAGATGAAGATTCGGAGGACGAAGGAGGGGGAATACCACTGGACATCCTTCAGGTTACAGATGAAGTGGAGGATAAGCAGAAAAATAGTGTGCTAAATGGAGATGATGACGATATCATTGTCATTGATCTGGGAGCCACCAAAGAAAACTTGGAACCAATGcTTGAAAAGGTGACTGTGGCCTATCAGAAGTCCTCCAGACTCATTCAGGATTTAGTCCAGATGGTAAACAAAACTTCCTCCGTGAGTTCTGCATCACCGTCATCATCTGACATCTCTAACAGACCCTCGTCAGCTTCGACCCCTGAGACCAGCTGTTCTGAATTGGTCGCACCAAAGCTGGAAATACAGGAAAACCCAATTGGGATCGTAAGGAATGAATCTCTACCGAAAGCACCTGAAATGTCCTCGCTTCTCAGCAATTCGGAACAATACAAACCTGTTGCTGGTTATAAGTCAGATTCTAAACCAACAATTAAGACTGAACCACAACTGACAGCAATAACTCCTTGGGAAATGAACATTTCAAAAGATCATGAAACGTCTGCTGCTCTTAACTCTCCATCCTTAAATTTAATTAAGACTGAACCTCAGTCGACAGCAGTGAGCCCTTCAGAAACACCGGAAACCTTTGCCAGTCCTCACTTTGGATCCATCACAACAGTAAAGACCGAGCCTCATGTGACGTTAATAAAGTCAGATATGACTTCACCTCCAGGCACTTCAAAGCCTTTCCGAATTGAATGCATTGCATCTATTAAGACTGAACCTCTGCTGAGAGCATTGACTCCTCAGATGTCTTTGCTTGAAAGAGATTCAGAAAAGTCAAGCAACCTTCATTCAGATCACGAAGCAACAAGTAACACTACACTAGCTTTTCCTGAAATCCTGAGAACTAAATCAGCATCAATGGAGACTGATCCTCAAGTGCCACTAGTGACCTGTTCAGAAATGTCTTCGTCTTCAAGCTATTCAGAACAAATGGAAATCGATGCCTGTGACTATATAACAAACAGAGAAACGAACCTGACTGAGCCCGAGTTGAAGACAGAAGTGGCATCACTGTTGAGCAGTTGTGAAGAAGCCGAAACTAATGCCAGCCGCGATTCCTCAGATAAGactgaaaagttaaaaacaagGGGCAAATCTGTAACAAAGAGCGGTTCAAAGACAAGGCTGAGATCTTCAAAAAAAACTGTGCCTGTAGGCAGCACTTCAAGCCCGCAAACGGAAACAACAACAGTGCAATCTCCTGCAGAAAGTAATGATGATCGCTCTGAAACCGAGGAATTCTCCGTTAGTCCTGCTGACAGTGATTATGAACCTCCTGAGTCACAGTCGGAGTCATTGTCAGACAGTGATTATGAACCCCCTAAATCAAAATCAAAGTCATCGAGAGACAGTGATTGTGAACCACCTACATCAAAATCGGAGTCATCGAAAGAGAGTCATTTTGAACCCCCTAAATCCCAATCAGAGTCATCGAGAGACAATGATTTTGAACCCTCTAAGTCACAATCTGAGTGTAACACTGTCGATGATGCTGATGATGCCAGCAGCAACGGTGCTTCTGCAGAACCTGCCAGTCCTGACGGaaGTTCCAAGTCTTCATCCAGTGAGTCCTCCAAGCAGCAAGAACATAAAGAGATAAAACTTAAAGTTGGCATGGCAGTTTTGGCAAAAAGGTCACACAACTTGTGGTGTAAAGGAACAGTACAAGACGTCCAAACAGAAGagcatgGCCTCAGGTATAAGGTGGAATTTAAAAATGGTGAAGAGTTTGTTCTGCCTGCGTATCATGTGGCCTCTCTGCAGCCTCCTGTACTTAAGGATTTGTTTATCGGCTGTCGTGTTGTGGCCAGCAGCACAGATGATGGAGGCAAGACCTCGTATAATGCTGCCGTGTTGGTTGAGCTTCCTGAGCGCAAGAATCGCATGAGGTTCTTGGTGTTTTATGATGATGGTCATGCAGCTTACCTGGCACTTCCAGACCTTCATCTTGTCTGCAGACAATTAAAAAAGGTGTGGAAGGACATTGAGGATGAGACATTGCAGTTGCAGGTGAAGGAATATCTCAGTGTCTATCCCAACCCCATTGCTGTGGTGCTTCGAGCGGGGCAAGACACAAAAGCGATACGGAATGGAAAGTTTGAGGCCTGCACGGTGCTCCAGTTGGATGGCAGCCTGATCCAGATCTGCTTTAAGaaagacAAGCAGAAAGAGTGGATTTATAAAGGATCAGACAAGTTGGAACATATCGTAAATATTAAGAAACGTCTGTCTAAagataaaccacaaaaaagccACACGCAACATGAACCACAACAAACGTCTCAACAACAACCACTGCAACAACAACCGTCTCAACCGAAAAcacagcagcaacaacaaccgTCTCAACCGAAAAcacagcagcaacaacaaccgTCTCAACCGAAAAcacagcagcaacaacaaccgTCTCAACCGAAaacgcagcagcagcagcaaccgTCTCAACCGAAaacgcagcagcagcagcaaccgTCTCAACCGAAAACGCAGCAACAACAACCGTCTCAAACGAAAACGCAGCAACAACAAACGTCTCAACCGAAAACGCAGCAGCAACAACCGTCTCAACCGAAAACGCAGCAGCAACAACCGTCTCAACAGAAAACGCAACAGCCTGCTATAACAGGAAATGCCACACCTCAGCGCAACACAACCTCCTCCTCTTTGACAGCAGTTCCCTCAGCAACTCTTACTTCAACGACTGTCACCTCAACAGCTGTATCTCCTGTTCGGGTCACCCGACGTTCTGATACAGTCGCCAAAACATCATCCGTTAGTCCTCAAATGATCATGTCAGCTGCCTTCCAGCCAAAGGTCATCCTCCAGAGGTTGTCAGTCTCAAATTTAAGAAGTGCAAAACGACCTGTCCCTGATGAGGAAGAAGAGAATGTTTCTGAGGGAAAAGGTTGCGTTTCAATGAAACCCCAGCAAAAATCTGTATACCTGCATCATCGTTGTTGTCCATCGTGTCTGGATGCGGTGAGACCGTCTGAAGTTGACATGCATCTTGGTCAAAATCCACTTCTTATACCGCTGCTTTTTAAGTTTCGGCGAATGACAGCTAGAAGGCGCATCGATGGAAAGgtgttttttcacattttctatCGTTCTCCTTGTGGGCGGGGCCTGTGCGACATGCGGGAAGTGCAGGAATACTTGTTAGAAACTCGTTGTGACTTCCTTTTTCTGGAAATGTTCTGCATGGACCCGTTTGTACTTGTGAATCGAGCCCGACCTCCTTCTACATCAACCGGCACGCCTCACCTTTATCTGCAGGACATATCAGAGGGCAAAGAGGTGTTGCCGGTGCCCTGTATTAATGAAGTGGACAATACTCTTGCTCCTAACATCAGTTACACCAAAGACAGAGTTCTAGCTCCGGGCGTTTCAATCAATACCAGTCCAGATTTCTTGATTGGCTGTGACTGCACAGATGGCTGTCGGGACAGGTCAAAGTGTGCATGCCACCAGCTGACCATTGAGGCCACGTCCCTATGCAATGGAGGTCCAGTGGATAGTAGTGCTGGATACACACATAAGAGATTGCCAACCACTTTACCAACAGGGGTGTACGAGTGTAATTCTCTGTGCCGTTGTGATCCGAGGATGTGCAGCAACAGGCTGGTTCAGCACGGCCTGCAGCTGCGGCTGGAGCTCTTCATGACACAGCACAAGGGATGGGGTATCCGCTGCAAAGATGATGTGGCCAAGGgcacgtttgtgtgtgttttcactgGGAAAATAGTAAACGAAGACCGAGTGAATGAAGACGACACGGTGTCTGGCAATGATTATTTGGCCAACCTTGACTTCATTGAGGGTGTGGAGAAAGTGAAAGAGGGTTATGAAAGCGAGGCGTACTGCTCGGACACAGAGGTCGAAGCCAACAAGAAGACCATAACAATGAAAACAGGGCCTTTATGGAAAAACACTATATATCAAGAAGAGTCTAGCAGTGGTGAAGaaagAGAAGAACTTATGGAACTCGACACAGAACAAGAGAAAATAGGAGTGAATCACGGGTACTCCGGTGAGAGAAAGCTATCCCATAAGACACATGAAAGGTTTAAAGATGCTCAGAAGAATGTGAAACAAATGAGAGAGGACGGTGAAGGAACCTCGGGTCCAAAGCGTTGCTTTGCCATAAAGTCATTCCAAAGAAGAGTGAAACCTCTAGAAACCTCGGATGCAAAGAATGAGAAAATGAGGAAAGCTGTAACTGGCAACAACACCCGCAGACTGTTCAACGGCGAAGAGACCTGTTACATCATTAATGCTAGACAAGAGGGCAACCTCGGCCGCTTCATCAACCATAGCTGCAGTCCAAATTTGTTTGTTCAGAACGTCTTTGTCGACACACACGACCTACGGTTTCCATGGGTGGCTTTCTTCGCCAGCAAGCGCATCAAGGCTGGTACGGAGTTGACGTGGGATTATAACTATGAGGTTGGCAGTGTGGAGGGGAAGGTTCTGCTCTGCTGCTGTGGCTCTTTGCGGTGCACAGGAAGGCTGCTCTGATTTGCTgcattcaacaacaaaaaaaacactaaaaactctTCTAGAGGTGTTATCACTGTAAACCGCTTTACCAAGCCATCATAAACGGTTGTGGCACTGTTCTGGAAAAGCATTCCATTAATGACCCATTGTATATGAAaactataacaaaatatattaaagtttgtgtca

Function

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198258 lncRNA downstream 50306 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA downstream 75367 17620174 ~ 17645633 (-) True G134252
TU198250 lncRNA downstream 126676 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 375784 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 431620 17287667 ~ 17289380 (-) True G133951
TU198296 lncRNA upstream 53617 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 54141 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 61655 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 116762 17852172 ~ 17857186 (-) True G134299
TU198337 lncRNA upstream 133721 17869131 ~ 17871519 (-) False G134298
XM_043217506.1 mRNA downstream 511 17711350 ~ 17720489 (-) False clk2a
XM_043217505.1 mRNA downstream 511 17711350 ~ 17720489 (-) False clk2a
XM_043217507.1 mRNA downstream 2887 17711350 ~ 17718113 (-) True clk2a
XM_043217508.1 mRNA downstream 2894 17711350 ~ 17718106 (-) False clk2a
XM_043218187.1 mRNA downstream 10892 17708014 ~ 17710108 (-) True si:ch211-81a5.8
XM_043218156.1 mRNA upstream 776 17736186 ~ 17741015 (-) True lrrc71
XM_043217515.1 mRNA upstream 6336 17741746 ~ 17769787 (-) False ash1l
XM_043217517.1 mRNA upstream 6336 17741746 ~ 17769774 (-) False ash1l
XM_043217516.1 mRNA upstream 6336 17741746 ~ 17769591 (-) True ash1l
XM_043217247.1 mRNA upstream 37185 17772595 ~ 17779156 (-) True rnf115b
TU198224 other downstream 104762 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 386766 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 436256 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 502251 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 820224 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 194279 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 194279 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 275472 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 448731 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 448731 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile