RNA id: TCONS_00009886


Basic Information

Item Value
RNA id TCONS_00009886
length 1401
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_005088
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3652015 ~ 3705862 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTCATGCTGAAGTAGAGTTCGCCGGACGCGCTTTCCCAGCTTTACCTGTTGAATTAGAGGACGACTGTCTCTCCAGAGTGCCAATGCTGCGCACACACTCCTTAAGCGCAAGGAGAAACTCATACGTGCTCCATAAACTCGACCCTCAGATATACAATGAGACGCTCTCCAAAGGTTTATCGTGGTCTGCAGAAAACATACTGCTGTCTGCAGACTCCAAAACAGACCCTTCGCCTCCAATGTCTCCATCTCCAGTGTCCAGCCCGGAGTCTGTAACACCCAATGCGGATTCAGCAGCTCCGGAGGACTGGAGAAGCCCCGTCCAGCAGCCTCGGTCTCCTCAGGATGCTAGTTCTGATTCGGATAATGAGGGAACAAAAGGGGAGAACGCAGTCCGACGGCGGCAGTTTTTAAGCAGGCTGGAGCAGGATGAGAAAGAGGACATCGAGACCAAAGCTGTGGCTACATCACCTGATGGACGATATCTGAAGTTTAATATTGAAATCGGGAGGGGGTCTTTTAAGACGGTCTACAAGGGACTGGACACCGAGACTACAGTGGAGGTGGCATGGTGCGAGTTACAGACTCGCAAACTGAGCAAAGTGGAGCGTCAGCGCTTCAGCGAAGAGGTCGAGATGCTCAAGGGTCTCCAGCATCCAAACATCGTGCGCTTTTACGACTCCTGGAAGTCCAACGTCAAAGGCCAGAAGTGCATCCTGCTGGTCACTGAGCTCATGACTTCTGGCACTCTCAAAACGTATCTGAAGCGTTTTAAGGAGATGAAGCTGAAGCTCCTGCAGCGGTGGAGCCGGCAGATCCTCAAGGGGCTTCACTTCCTGCACACACGCTCTCCTCCCATCATACACCGGGACCTGAAGTGCGACAACATCTTCATCACGGGGCCCACAGGAAGTGTGAAGATCGGGGACCTGGGACTGGCCACTCTCAAGAGGGCCAGCTTTGCTAAAAGCGTCATAGGAACTCCTGAATTCATGGCTCCTGAAATGTATGAGGAGAAATACGACGAGGCGGTGGACGTTTATGCATTTGGCATGTGTATCTTGGAGATGACCACATCCGAATACCCATATTCAGAGTGCCAAAACGCTGCCCAGATTTACCGCAAAGTTACCAGTGTAAGTTTCAACCTGCTTACTTGCTTGGATAACATTAAAGGGGAAGTTCATTCAAAAaaagcatgtgctgtcatggctttgcaatcaaaaaaatgtcattataatggaagtcaatggggcaaaaacagccaccagaGAGTGCCCAGagagtattgtttttttgtttttggtaatttttcccaaaaaaaagtattttaccaaaaaatgtgtcaaattaaGATTTTTCACCTGAAatcatcccatttgctgaaacCCAGATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011070 lncRNA downstream 81934 3569747 ~ 3570081 (-) True XLOC_005087
TCONS_00011069 lncRNA downstream 107999 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00010794 lncRNA downstream 265196 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00010793 lncRNA downstream 269331 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00011067 lncRNA downstream 367106 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011071 lncRNA upstream 76759 3782621 ~ 3786382 (-) True XLOC_005092
TCONS_00009895 lncRNA upstream 99793 3805655 ~ 3806820 (-) True XLOC_005093
TCONS_00011072 lncRNA upstream 154602 3860464 ~ 3865234 (-) True XLOC_005094
TCONS_00011073 lncRNA upstream 383875 4089737 ~ 4129820 (-) True XLOC_005102
TCONS_00011074 lncRNA upstream 437732 4143594 ~ 4169699 (-) True XLOC_005103
TCONS_00009885 mRNA downstream 198426 3314504 ~ 3453589 (-) False XLOC_005085
TCONS_00009884 mRNA downstream 352866 3287783 ~ 3299149 (-) True XLOC_005084
TCONS_00009883 mRNA downstream 399752 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009882 mRNA downstream 414454 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009881 mRNA downstream 518532 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009888 mRNA upstream 8214 3714076 ~ 3721957 (-) True XLOC_005089
TCONS_00009889 mRNA upstream 34743 3740605 ~ 3756405 (-) False XLOC_005090
TCONS_00009890 mRNA upstream 34886 3740748 ~ 3753131 (-) True XLOC_005090
TCONS_00009891 mRNA upstream 60695 3766557 ~ 3778848 (-) False XLOC_005091
TCONS_00009892 mRNA upstream 61180 3767042 ~ 3773869 (-) True XLOC_005091
TCONS_00009859 other downstream 2161427 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 3029726 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 580504 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 589687 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 591995 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 592365 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 1693818 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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